Gene Ssed_0015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0015 
SymbolglyQ 
ID5609688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp17855 
End bp18718 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content49% 
IMG OID640930838 
Productglycyl-tRNA synthetase subunit alpha 
Protein accessionYP_001471756 
Protein GI157373156 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0752] Glycyl-tRNA synthetase, alpha subunit 
TIGRFAM ID[TIGR00388] glycyl-tRNA synthetase, tetrameric type, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000278552 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCTGC AGGAGTTCTG GGCGCAGCAA GGTTGCGCAA TCGTTCAACC ATTGGACATG 
GAAGTAGGAG CGGGGACATT CCACCCTATG ACCTTCTTAC GAGCATTAGG CCCAGAGCCG
ATGAGCTGTG CTTATGTTCA ACCTAGTCGC CGCCCTACTG ATGGCCGTTA CGGCGACAAC
CCGAATCGCC TACAACACTT CTATCAATTC CAGGTAGTGT TAAAGCCGTC TCCGGACAAT
ATTCAAGAGC TTTATCTTGG TTCTTTAGCA GCCGCTGGTA TCGACATGGA CATTCATGAC
GTGCGCTTCG TTGAAGACAA CTGGGAGTCA CCGACTCTTG GTGCCTGGGG TCTTGGCTGG
GAAGTCTGGT TAAACGGCAT GGAAGTGTCG CAATTTACTT ACTTCCAGCA AGTGGGTGGA
TTAGAGTGTA AGCCTGTTAC CGGCGAGATC ACTTACGGTC TTGAACGTCT TGCTATGTAC
ATCCAGGAAG TCGATAACGT ATACGATCTA GTATGGACTG ACGGCCCAAT GGGCAAAGTT
ATGTATGGTG ATATTTTTCA CCAGAACGAA GTTGAACAGT CAGCTTATAA CTTTGAACAC
GCTAATGTTG AAGTGTTATT CAGAACCTTT GATGACTGCG AAAAAGCTTG CCAGCATCTG
CTAAATCTTG AAAAGCCCCT TCCACTGCCT GCCTACGAGC AAGTAATGAA AGCCTCTCAC
GCATTTAACT TGCTTGATGC GCGCCACGCT ATCTCAGTGA CCGAACGCCA GCGTTATATC
TTACGCGTTC GCACTATGGC TAAAGGCGTT GCGGAGTCTT ACTATCAAGC CCGTGAAGCT
CTCGGCTTCC CAATCTGTAA GTAG
 
Protein sequence
MTLQEFWAQQ GCAIVQPLDM EVGAGTFHPM TFLRALGPEP MSCAYVQPSR RPTDGRYGDN 
PNRLQHFYQF QVVLKPSPDN IQELYLGSLA AAGIDMDIHD VRFVEDNWES PTLGAWGLGW
EVWLNGMEVS QFTYFQQVGG LECKPVTGEI TYGLERLAMY IQEVDNVYDL VWTDGPMGKV
MYGDIFHQNE VEQSAYNFEH ANVEVLFRTF DDCEKACQHL LNLEKPLPLP AYEQVMKASH
AFNLLDARHA ISVTERQRYI LRVRTMAKGV AESYYQAREA LGFPICK