Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0015 |
Symbol | glyQ |
ID | 5609688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 17855 |
End bp | 18718 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640930838 |
Product | glycyl-tRNA synthetase subunit alpha |
Protein accession | YP_001471756 |
Protein GI | 157373156 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0752] Glycyl-tRNA synthetase, alpha subunit |
TIGRFAM ID | [TIGR00388] glycyl-tRNA synthetase, tetrameric type, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000278552 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCTGC AGGAGTTCTG GGCGCAGCAA GGTTGCGCAA TCGTTCAACC ATTGGACATG GAAGTAGGAG CGGGGACATT CCACCCTATG ACCTTCTTAC GAGCATTAGG CCCAGAGCCG ATGAGCTGTG CTTATGTTCA ACCTAGTCGC CGCCCTACTG ATGGCCGTTA CGGCGACAAC CCGAATCGCC TACAACACTT CTATCAATTC CAGGTAGTGT TAAAGCCGTC TCCGGACAAT ATTCAAGAGC TTTATCTTGG TTCTTTAGCA GCCGCTGGTA TCGACATGGA CATTCATGAC GTGCGCTTCG TTGAAGACAA CTGGGAGTCA CCGACTCTTG GTGCCTGGGG TCTTGGCTGG GAAGTCTGGT TAAACGGCAT GGAAGTGTCG CAATTTACTT ACTTCCAGCA AGTGGGTGGA TTAGAGTGTA AGCCTGTTAC CGGCGAGATC ACTTACGGTC TTGAACGTCT TGCTATGTAC ATCCAGGAAG TCGATAACGT ATACGATCTA GTATGGACTG ACGGCCCAAT GGGCAAAGTT ATGTATGGTG ATATTTTTCA CCAGAACGAA GTTGAACAGT CAGCTTATAA CTTTGAACAC GCTAATGTTG AAGTGTTATT CAGAACCTTT GATGACTGCG AAAAAGCTTG CCAGCATCTG CTAAATCTTG AAAAGCCCCT TCCACTGCCT GCCTACGAGC AAGTAATGAA AGCCTCTCAC GCATTTAACT TGCTTGATGC GCGCCACGCT ATCTCAGTGA CCGAACGCCA GCGTTATATC TTACGCGTTC GCACTATGGC TAAAGGCGTT GCGGAGTCTT ACTATCAAGC CCGTGAAGCT CTCGGCTTCC CAATCTGTAA GTAG
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Protein sequence | MTLQEFWAQQ GCAIVQPLDM EVGAGTFHPM TFLRALGPEP MSCAYVQPSR RPTDGRYGDN PNRLQHFYQF QVVLKPSPDN IQELYLGSLA AAGIDMDIHD VRFVEDNWES PTLGAWGLGW EVWLNGMEVS QFTYFQQVGG LECKPVTGEI TYGLERLAMY IQEVDNVYDL VWTDGPMGKV MYGDIFHQNE VEQSAYNFEH ANVEVLFRTF DDCEKACQHL LNLEKPLPLP AYEQVMKASH AFNLLDARHA ISVTERQRYI LRVRTMAKGV AESYYQAREA LGFPICK
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