| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0014 |
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| Symbol | glyS |
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| ID | 5609687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 15774 |
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| End bp | 17843 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640930837 |
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| Product | glycyl-tRNA synthetase subunit beta |
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| Protein accession | YP_001471755 |
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| Protein GI | 157373155 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
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| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000639104 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTTG AAAACTTACT GATTGAAGTA GGCACAGAAG AACTACCTCC AAAATCATTA
CGTAAGTTAG CTGAGTCTTT TCTTAGCAAT TTTACTGATG AACTAAAAAA AGCAGAACTC
AGCTTTGAGT CTGCAGTATG GCATGCGGCC CCTCGCCGTT TAGCAATCTG CGTTAACCAA
CTTGCTTTAG CTCAGGCTGA CAAAGTGGTA GAAAAACGTG GACCAGCTAT CGCTCAAGCC
TTCGATACTG ACGGTAACCC AACAAAAGCC GCTATGGGCT GGGCTCGTGG TAATGGTATT
ACTGTTGAGC AAGCCGGACG TCTTAAAACC GATAAAGGTG AATGGCTGTT ACACCAAGCT
AAAGTGGTTG GTGTTGAAAC TAAGAGCCTT ATTGCCGCTA TGGCGCAGCG CTCTTTAGAC
AAGTTACCTA TCCCTAAGCC TATGCGCTGG GGTAACAACA CCACTCAGTT TATTCGTCCG
GTTCACACTG TGACTATGCT GCTTGGAAGT GAAGTGGTTG AAGGTGAGTT GTTAGGTCAA
AAGTCGGCTC GCATTATTCG TGGTCACCGC TTTATGGGCA AAGCAAGCTT CGAGCTTGTT
CATGCCGACA ACTACCTATC AGCACTAAAA GAACAAGGTA AAGTAGAGGC CAATTATGAG
GTGCGTAAAG CACTGATTAA AGCCGGTGCT GAAGCTGCTG CCGCCAAGAT TGGTGGCGTA
GCCGATCTCG AAGACGATCT ACTTGAAGAG GTGACCTCTC TGGTCGAGTG GCCTGTGGTA
TTAACCGCCA ATTTCGAAGA GAAGTTCCTG GATGTACCCG CCGAAGCTTT GGTTTACACA
ATGAAAGGCG ATCAGAAGTA CTTCCCTGTA TTCGATAAAG CAGGTCAGCT AATGCCTAAC
TTTATCTTCG TTACTAATAT CGAATCTAAA GATCCACAGC AGATTATTGC GGGCAACGAG
AGAGTGGTTC GCCCACGTCT TGCCGATGCA GAATTCTTCT TCGAAACCGA TAAGAAAGAC
TCTCTGGAGT CTCGCCTTAC GAGTTTAGAA ACCGTGATAT TCCAGAAGCA ACTGGGCACC
ATCAAAGATC GTGTCGCGCG CATCTCAGAT ATGGCTGGGT TTATTGCTAA CAGCATAGAT
GCTAACGCTG ATGAAGCGGC TCGCGCAGGT TTACTGTCTA AATCTGACCT GATGACCAAC
ATGGTAATGG AGTTTACTGA TCTTCAGGGC ACTATGGGTA TGCATTACGC ACGCCTGAAC
GGTGAAACTG AAGCGGTAGC CCTTGCCCTG CAAGAGCAAT ACAAGCCTAA GTTCTCTGGT
GACACGGTTC CAACTGCGCC TGTCTCTGTA TGTGTCGCTT TAGCTGAAAA GCTCGATACT
TTAGTGGGTA TTTTCGGTAT TGGCCAAGCA CCTAAGGGCG CTGCCGATCC ATTCGCACTT
CGCCGTGCAG CTATCGGTAT CCTGCGTATC TGCGTCGAGA ACAACCTGCC GCTAAACCTT
ATAGACCTTA TCGCTAAGGC GCAAGAGCTA CATGGTAGCA ACCTTACCAA TGATAAGGCT
GCCGAGCAGG TACTAGAGTT CTTTATGGGT CGCTTCCGCG CCTGGTATCA AGATCAAGGT
GTTAGCGTAG ACGTTATCTT AGCCGTATTG GCACGTCGCC CTACATCACC AGCCGATTTC
GATAGTCGTA TCAAAGCAGT ATCTCACTTT AGAAGTCTTG AACAAGCATC GGCACTTGCC
GCTGCCAACA AACGTGTATC TAATATTCTG GCTAAAGTTG AGGGTGAACT TCCGGCAGCT
ATCGATGCAG GCTTGTTAGT TGAGAATGCT GAGAAAGTAT TAGCCGAAAA GCTAAACGAA
CTTCAGCCAC AACTGGCACC GCTGTTTGCT GCTGCTAACT ATCAGGAAGC ATTAGCGCTG
CTTGCGGATC TGCGTGAAAG CGTCGATACC TTCTTCGAAG ATGTGATGGT TATGGCCGAC
GATGAAGCAC TGAAGAACAA CCGTTTAGCG CTACTATCCA GCCTACGCGA GCAGTTCCTG
CATGCTGCAG ATATTTCATT ACTGCAATAA
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| Protein sequence | MNFENLLIEV GTEELPPKSL RKLAESFLSN FTDELKKAEL SFESAVWHAA PRRLAICVNQ
LALAQADKVV EKRGPAIAQA FDTDGNPTKA AMGWARGNGI TVEQAGRLKT DKGEWLLHQA
KVVGVETKSL IAAMAQRSLD KLPIPKPMRW GNNTTQFIRP VHTVTMLLGS EVVEGELLGQ
KSARIIRGHR FMGKASFELV HADNYLSALK EQGKVEANYE VRKALIKAGA EAAAAKIGGV
ADLEDDLLEE VTSLVEWPVV LTANFEEKFL DVPAEALVYT MKGDQKYFPV FDKAGQLMPN
FIFVTNIESK DPQQIIAGNE RVVRPRLADA EFFFETDKKD SLESRLTSLE TVIFQKQLGT
IKDRVARISD MAGFIANSID ANADEAARAG LLSKSDLMTN MVMEFTDLQG TMGMHYARLN
GETEAVALAL QEQYKPKFSG DTVPTAPVSV CVALAEKLDT LVGIFGIGQA PKGAADPFAL
RRAAIGILRI CVENNLPLNL IDLIAKAQEL HGSNLTNDKA AEQVLEFFMG RFRAWYQDQG
VSVDVILAVL ARRPTSPADF DSRIKAVSHF RSLEQASALA AANKRVSNIL AKVEGELPAA
IDAGLLVENA EKVLAEKLNE LQPQLAPLFA AANYQEALAL LADLRESVDT FFEDVMVMAD
DEALKNNRLA LLSSLREQFL HAADISLLQ
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