| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0012 |
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| Symbol | |
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| ID | 5609755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 13485 |
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| End bp | 14171 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930835 |
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| Product | hypothetical protein |
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| Protein accession | YP_001471753 |
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| Protein GI | 157373153 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2049] Allophanate hydrolase subunit 1 |
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| TIGRFAM ID | [TIGR00370] conserved hypothetical protein TIGR00370 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000230689 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACAACAG AGCAGACTCC TAAGGTTTTT AGGTTGGGGG AAGGTGCAGT AGTTATAGAC
AGCACCAATT ACTTTCCGGA GGTATCGAGA CTCAGTATCC AACGCAAAAT TTGGTGGTTG
GCCGATCGAT GCAGACAGAC AGATGAATTT ATCGATATCG TCCCCGGCAT GAACAACCTC
ACCCTCTTTG TGAAGAGTAA CAATCGAATA AATTATTGGT TAGCTCAATT AGGCACACTC
TGGCTACAGG CGAAAGAGAT GAGTCTCAGT GGCCGAAATG TAGAGATCCC TCTTGTCTAT
GGGGGAGAAT TTGGTCCGGA TTTGGAACGG CTGGCCAAGT ATCACCAACT CAGTTGTAAG
GAGGTAGTGC GGCGACATTC AAATGGGAAA TATACCGTCC TGTTTCTGGG ATTTCAGCCA
GGCTTCCCCT ATCTTGACGG ACTGGACTCA AGTCTGTTTA CCCCCAGGTT GGCAGTGCCA
AGATTATCAA TTCCCGCTGG CTCCGTTGGA ATAGGTGGCA ATCAGACAGG TATTTATCCG
GCGTCCGCCC CCGGAGGCTG GCAACTTATT GGCCGCACCA ATATGCCCCT GTTTACTCCG
GAGTCCATCG GCTCACCAAC ACTTGTCGAA CCCGGTGATA CCGTTCAATT TATTCCGGTG
ACAAGTCTGG TGTTTAGTGC CAAATAA
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| Protein sequence | MTTEQTPKVF RLGEGAVVID STNYFPEVSR LSIQRKIWWL ADRCRQTDEF IDIVPGMNNL
TLFVKSNNRI NYWLAQLGTL WLQAKEMSLS GRNVEIPLVY GGEFGPDLER LAKYHQLSCK
EVVRRHSNGK YTVLFLGFQP GFPYLDGLDS SLFTPRLAVP RLSIPAGSVG IGGNQTGIYP
ASAPGGWQLI GRTNMPLFTP ESIGSPTLVE PGDTVQFIPV TSLVFSAK
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