Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0009 |
Symbol | |
ID | 5609752 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 8689 |
End bp | 11130 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640930832 |
Product | DNA topoisomerase (ATP-hydrolyzing) |
Protein accession | YP_001471750 |
Protein GI | 157373150 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.983538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000705515 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAATAACC GACGAGAGAA TAATATGTCA GAGAACAGTT ACGATTCTTC CAGTATTAAG GTACTAAAAG GCCTTGATGC AGTACGGAAG AGACCCGGGA TGTATATCGG TGATACCGAC GACGGCACTG GTCTACATCA TATGGTATTC GAAGTAGTCG ATAACTCAAT CGATGAAGCC TTAGCGGGCC ATTGTAATGA CGTTATCATC ACTATCCATG CCGATGGTTC TGTATCGGTA AAAGATGATG GTCGTGGTAT TCCTGTTGCG ATTCACCCTG AAGAGGGCAT ATCTGCAGCC GAAGTTATTA TGACGGTACT CCATGCCGGC GGTAAGTTCG ATGATAACTC ATACAAAGTG TCTGGTGGTC TTCACGGTGT AGGTGTTTCT GTTGTAAATG CACTATCTCA CAAGCTACAG CTGACTATTC GTCGTGACGG TAAGCTTTAT GAGCAGTTTT ACACTCATGG TGAGCCAGAT GAGCCCATTA AAGCTATCGG TGATGCAACC AATACTGGTA CGGAGATTCG TTTCTGGCCA AGTACAGATA CCTTCACCGA TGTATTGTTC CATTTCGATA TCTTAGCCAA GCGTGTTCGT GAACTTTCGT TCCTAAACTC CGGTGTAGGT GTTCGTCTTG TCGATGAGCG TGATAATCGT GATGAGTTTT TCAAATACGA TGGTGGTATC AGTGCCTTCG TTGATTACTT GAACGTTAAC AAGACTCCGG TAAACAAAGA AGTTTTCCAC TTCATCCAAG AGCGCGATGA CGGTATTACC GTAGAAGTTG CTATGCAGTG GAATGATGGT TTTCAGGAGA ATATCTTCTG TTTTACCAAC AACATTCCTC AGCGTGATGG TGGTACTCAC CTTGCTGGTT TCCGCGGTGC TTTGACCCGT AACCTAAACA CCTATATGGA GCGTGAAGGT TACAATAAGA AGGGTAAGAC TGGCGCGACC GGTGATGATG CCCGTGAAGG TCTGACAGCA GTTATCTCTG TTAAAGTTCC AGATCCTAAG TTCAGTTCTC AGACTAAAGA CAAGCTGGTT TCGAGTGAAG TGAAGTCTGC TGTTGAGCAA ACAATGGGTG AGCAGTTAGG TGATTACCTG ATGGAGCATC CAAACGAAGC TAAATTAATT GTCGGTAAGA TTATTGATGC GGCTCGTGCT CGTGAAGCGG CGCGTAAAGC CCGTGAAATG ACTCGTCGTA AAGGCGCGTT AGATCTGGGT GGTCTGCCAG GGAAACTTGC CGATTGCCAA GAGAAAGACC CTGCGCTTTC TGAAATATAC ATAGTGGAAG GAGACTCTGC TGGCGGTAGC GCCAAGCAGG GGCGTAACCG TAAGAACCAA GCGATTCTGC CACTTAAAGG TAAGATTTTA AACGTTGAGA AGGCACGTTT CGATAAGATG CTCTCTTCTC AAGAAGTGGC AACGCTTATC ACTGCACTAG GTTGTGGTAT TGGCCGTGAT GAATACGATC CGGATAAAAC GCGTTACCAT AACATCGTCA TCATGACCGA TGCCGACGTC GATGGCTCGC ACATCCGTAC CTTGCTATTG ACCTTCTTCT TCCGTCAAAT GCCTGAGCTC ATCGAGCGTG GCTTTGTTTA TATTGCCCAG CCACCGCTTT ATAAAGTTAA GAAAGGTAAG CAAGAACAGT ACCTTAAAGA TGACCCAGCA TTGACTGAGT TTTTGACTAA TTTAGCGTTA GACGGTGGTG AAATCCATGC GTCTGCCAAT GCGCCGGCCA TGTCTGGCGC ACCACTAGAG AAGCTGGTTT ATCAGTATCG TGAAGTTGAA GCTATCTTTG ACCGCTTAGA TCAGCGCTAC CCATTGATGT TAACTGAGCG CATGCTATAT CACCCAGCAT TGAGTAACGA TGTTTTAGCC GATGAAGCTA AGGTTCAGCA GTGGTGTGAT GCCTATGTTG CCGATCTGGC AGAGAAAGAG TCTGGTGGGT ATATCTTTAG TGGAGAAGCC TTCCTGGAGC CTGAACGTCA AGTGTATCTT CCTAAGATCA CTATTCGTAA GCACGGTATC GATACTCACT ATCTGTTCTC GTATGACTTC CTGCAGTCGA GCGATTATGA GCGTATGGCA AAACTTGCTA CTGCGCTTGA TGGCTTAATT GAAGAGGGCG GCTATGTTAA ACGTGGTGAG CGCCTGAAAG AAGTTTCCAG CTTCGTTGAG GCACTCGATT GGTTAATGAA TGACTCCAGG CGTGGTCTTT ATATACAACG ATACAAAGGA TTGGGTGAGA TGAACCCAGA GCAATTATGG GAAACCACCA TGGATCCTGA GTCTCGTCGT ATGCTAGTGG TTACGATTGA AGATGCGATT GCTGCCGATC AGTTGTTTAC CTGCTTGATG GGCGATCAGG TTGAGCCACG TCGTGAATTT ATCGAATCAA ATGCGCTGAA CGTAGCTAAC TTGGATGTCT AG
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Protein sequence | MNNRRENNMS ENSYDSSSIK VLKGLDAVRK RPGMYIGDTD DGTGLHHMVF EVVDNSIDEA LAGHCNDVII TIHADGSVSV KDDGRGIPVA IHPEEGISAA EVIMTVLHAG GKFDDNSYKV SGGLHGVGVS VVNALSHKLQ LTIRRDGKLY EQFYTHGEPD EPIKAIGDAT NTGTEIRFWP STDTFTDVLF HFDILAKRVR ELSFLNSGVG VRLVDERDNR DEFFKYDGGI SAFVDYLNVN KTPVNKEVFH FIQERDDGIT VEVAMQWNDG FQENIFCFTN NIPQRDGGTH LAGFRGALTR NLNTYMEREG YNKKGKTGAT GDDAREGLTA VISVKVPDPK FSSQTKDKLV SSEVKSAVEQ TMGEQLGDYL MEHPNEAKLI VGKIIDAARA REAARKAREM TRRKGALDLG GLPGKLADCQ EKDPALSEIY IVEGDSAGGS AKQGRNRKNQ AILPLKGKIL NVEKARFDKM LSSQEVATLI TALGCGIGRD EYDPDKTRYH NIVIMTDADV DGSHIRTLLL TFFFRQMPEL IERGFVYIAQ PPLYKVKKGK QEQYLKDDPA LTEFLTNLAL DGGEIHASAN APAMSGAPLE KLVYQYREVE AIFDRLDQRY PLMLTERMLY HPALSNDVLA DEAKVQQWCD AYVADLAEKE SGGYIFSGEA FLEPERQVYL PKITIRKHGI DTHYLFSYDF LQSSDYERMA KLATALDGLI EEGGYVKRGE RLKEVSSFVE ALDWLMNDSR RGLYIQRYKG LGEMNPEQLW ETTMDPESRR MLVVTIEDAI AADQLFTCLM GDQVEPRREF IESNALNVAN LDV
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