| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0008 |
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| Symbol | recF |
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| ID | 5610246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 7614 |
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| End bp | 8696 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640930831 |
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| Product | recombination protein F |
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| Protein accession | YP_001471749 |
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| Protein GI | 157373149 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
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| TIGRFAM ID | [TIGR00611] recF protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0621721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000274736 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTCTGA CGCGTCTTCA TATTGAAACA TTTCGGAATA TCACTTCAGC TCAACTACTT
CCTGGTGAGG GAATTAATCT GATTTATGGC CATAATGGCA GTGGAAAAAC CAGTATTTTA
GAGGCGATCT ATTTTCTTGG TATGGGCCGC TCTTTTCGCA GCCACCTTTC ACAACGAGTG
ATTCAACATT CAGATGATAA GTTGACACTG TTTGCCAATT TAAATGTGCT CGATAAAGAG
AGCAAAATTG GATTAAGACG GTTTCGAAGT GGTGAAACTG AGGTCAAAAT TGATGGCGAT
AAAGTTAAAC GCCTGTCGAC CTTGGCTGAG TCTCTACCCA TTCAGGTGAT CACTCCCGAG
AGTTTTGCAC TGTTATTTGA AGGGCCAAAA TCGAGACGTC AATTTATCGA TTGGGGTGCG
TTTCATTGCG ATAAAAGTTT TCATTCGGCC TGGGTCAATG TTAAGCGAAT TTTAAAGCAG
AGAAATCAGC TACTTAAAAA TGAAACCAGT TACTCTCAAA TTCAATTTTG GGATAAAGAG
TTGGTTCGAT ATTCTGAAGT CGTTACCGAT ATAAGAACTC GATATGTAAA CTCGTTAAAT
GAGCAACTTA AGGGTATAAT TGGGGAGTTT TTACCTCTGG TTGATGTAAA GGTTTCCTTT
ACCCGAGGCT GGGATAGTAA AACTGATTAC GCGCAGTTAC TCGAGATGCA ATATCCCAGA
GATCTCGCTA GTGGAAATAC CGGTAGCGGG CCCCATAAAG CCGATCTGAG ATTACGTGTT
GGTACCTTAC CGGTACAAGA TGCATTATCC CGGGGCCAAT TGAAATTGTT AGTCTGTGCA
CTGCGTATCG CACAGGGAAA GTTGTTAAAA CAACAAATAG ATAAGAATAG TATTTATCTG
GTGGATGATC TTCCAGCAGA GTTGGATGCA AAGCACAGAC AGCTGTTGCT GCAGCAGTTG
ATCGACACCG GTGCACAAGT ATTTGTCACC GCCATCGAGC CTGCAGCGAT ACTAGATTCG
TTAATCACGC CGCCGAGTAA GACGTTCCAT GTGGAACACG GTCGTGTAAC GGTAATTGAA
TAA
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| Protein sequence | MSLTRLHIET FRNITSAQLL PGEGINLIYG HNGSGKTSIL EAIYFLGMGR SFRSHLSQRV
IQHSDDKLTL FANLNVLDKE SKIGLRRFRS GETEVKIDGD KVKRLSTLAE SLPIQVITPE
SFALLFEGPK SRRQFIDWGA FHCDKSFHSA WVNVKRILKQ RNQLLKNETS YSQIQFWDKE
LVRYSEVVTD IRTRYVNSLN EQLKGIIGEF LPLVDVKVSF TRGWDSKTDY AQLLEMQYPR
DLASGNTGSG PHKADLRLRV GTLPVQDALS RGQLKLLVCA LRIAQGKLLK QQIDKNSIYL
VDDLPAELDA KHRQLLLQQL IDTGAQVFVT AIEPAAILDS LITPPSKTFH VEHGRVTVIE
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