Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0007 |
Symbol | |
ID | 5610245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 6220 |
End bp | 7320 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640930830 |
Product | DNA-directed DNA polymerase |
Protein accession | YP_001471748 |
Protein GI | 157373148 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000118658 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000121971 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGAAATTTT CAATTGATAG GGATGCCCTA TTAAAGCCGT TGCAACTTGT GACCGGAGCG GTGGAGAGAC GACATAACTT GCCAATACTG GCAAACCTCT TAGTTGAAGT GAGTGGTCAC TCACTTAAGA TGACCGGTAC CGATTTAGAA GTCGAATTGG TGGGGCAGGT TCAGTTAGAG GGTGACGTAC AGGAAGGACG TACCACGATA CCGGCGAAAA AATTTCTCGA TATTGTTAAA TCATTACCCG ATCAGGTAGA GCTTAAAATC GAGCAACAGG AAAATCGCCT GTTACTCCGC TCTGGTCGTA GTCGTTTTAC TCTGGCAACA CTCCCTGCCG AAGAATATCC GAATGTGGAG GCCTTCCAGG CCGATATCGA ATTTACGATA AAGCAAGGCA CACTCAAGTC ACTCATCGAT GCGACTCAGT TCTCGATGGC TAATCAGGAT GTCCGTTATT ATCTTAACGG TTTGTTGTTA GAGACCGAAG GAAATGTGCT GCGTGCTATC GCTACCGATG GTCATCGCTT AGCATTGAGC CATCGTATGG TTGAAGAATC ACTGCCTGAG AAGCAGGTGA TCGTGCCGCG TAAAGGTGTG GTCGAGTTGC AACGCTTATT CGAAGGCGAA GATTTAGATA TCACTATCGC TATCGGCGAT AATGCCATTC GTGCGACGAC GGGGAGTGCT GTATTCACCA GTAAGCTGGT CGATGGTCGC TTCCCTGATT ACCGTCGTGT ATTGCCTAAA GGTGGCGATA AGATCGTTAT TGCGAGTCGT AACCATCTTA AACAGGCGCT ATTGCGTGCT TCTATTCTTT CAAATGAAAA ATTCCGTGGC GTACGTGTTC AGCTTGAAAA TAATCTGATA AAGATCACCG CCAATAATCC GGAGCAGGAA GAAGCGGAAG AGATCTTAGA TGTTGAATAC GAAAACACCC CGCTTGAGAT AGGGTTTAAC GTCAGCTATC TGCTCGATGT CCTCAACAAC TTACCTTCTG ATGATGTTCG TATCACGCTT ATCGATGGTA ATTCGAGTGC CCTGATAGAG AACCATATAG AAGAAAATTC TATGTACGTG GTTATGCCGA TGAGACTCTA G
|
Protein sequence | MKFSIDRDAL LKPLQLVTGA VERRHNLPIL ANLLVEVSGH SLKMTGTDLE VELVGQVQLE GDVQEGRTTI PAKKFLDIVK SLPDQVELKI EQQENRLLLR SGRSRFTLAT LPAEEYPNVE AFQADIEFTI KQGTLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS HRMVEESLPE KQVIVPRKGV VELQRLFEGE DLDITIAIGD NAIRATTGSA VFTSKLVDGR FPDYRRVLPK GGDKIVIASR NHLKQALLRA SILSNEKFRG VRVQLENNLI KITANNPEQE EAEEILDVEY ENTPLEIGFN VSYLLDVLNN LPSDDVRITL IDGNSSALIE NHIEENSMYV VMPMRL
|
| |