| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_2180 |
|---|
| Symbol | |
|---|
| ID | 5596991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 1247699 |
|---|
| End bp | 1248658 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640929811 |
|---|
| Product | Sel1 repeat-containing protein |
|---|
| Protein accession | YP_001467093 |
|---|
| Protein GI | 157164139 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0570627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TAGTTTTACT AATATTTTTA ACACTAAATT TAATAGCCTT AACAACAAAC
CCAAAGATCA AAATCCCTCA AGCAAATAGC TGCAATATCG AGGATAACTG CATTGATTTT
AGCCGCAGAT ACAGCGATGA TGAGTATAAA AGGCTATTTG AAATTTACAA AAGTGAGTGC
GAGCTTAAAA ATTTAGACGC ATGTATCTAT CTGGCTGAGT TTTACAAAAG CGGGCTTGGC
GTAAAAAAAG ACATGGCAAA ATCACTAGAA ATTCTTAACA AAGCTTGCGA TGAGAGCAAT
AAATTTGCCT GCCACAACCT AGGTGTTGAG TATCAAGAGA TGAAAGATCA CAAAAAGGCT
TTAGAAGCTT TTAAAAAAGG CTGCGATCTA GCTTTTATAC AAAGCTGTTT TAACATCGCA
GTTTTATATA ATAACGGCGG CGGCGTAAAA AGAGACTACA AAAAGGCTGC TAAAATTTAC
AAAGAAGTTT GCGAGCAAAA TTTCTATGAA GGGTGCTACA ACCTAGCCGT TTTATACCAC
AACACCCCTG GCGCAAAGCG CGACTACAAA GAAGCGATAA AGCTTTATAA AAAGGCTTGT
GATAGCGACT TTAGCATCTC TTGCTACAAC CTAGCGACCT TATATCAAGA GCAAAAAGAG
TATGAAAAGG CTAACAAGCT CTATTTTAAA GCTTGCAAGC TTGACTTTGC CGATGCTTGT
AATAACCTAG CCAGCCTTTA CGACGACGCA CTTGGCGTAG AAAAAGATGA TGAAGTGGCG
TTTAGATACT ACAACAAAGC GTGCAGGCTA GATAGCGCAA GTGGGTGCAA ACATCTTGCA
TACTTTTACT ATCATGGCAT AGGCACAAAA AAGGATAAAA AACTGGCAGA AAAAGAGCTT
AAAAAAGCTT GCAAGCTAGG CCTTAAAGAG GCTTGCGAGA TAGTTAGAGA TTTTCATTAA
|
|---|
| Protein sequence | MKKIVLLIFL TLNLIALTTN PKIKIPQANS CNIEDNCIDF SRRYSDDEYK RLFEIYKSEC
ELKNLDACIY LAEFYKSGLG VKKDMAKSLE ILNKACDESN KFACHNLGVE YQEMKDHKKA
LEAFKKGCDL AFIQSCFNIA VLYNNGGGVK RDYKKAAKIY KEVCEQNFYE GCYNLAVLYH
NTPGAKRDYK EAIKLYKKAC DSDFSISCYN LATLYQEQKE YEKANKLYFK ACKLDFADAC
NNLASLYDDA LGVEKDDEVA FRYYNKACRL DSASGCKHLA YFYYHGIGTK KDKKLAEKEL
KKACKLGLKE ACEIVRDFH
|
|---|
| |