Gene CCC13826_2127 details

Gene Information

• Locus tag: CCC13826_2127
• Symbol: carB
• ID: 5595786
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter concisus 13826
• Kingdom: Bacteria
• Replicon accession: NC_009802
• Strand: -
• Start bp: 1736326
• End bp: 1739586
• Gene Length: 3261 bp
• Protein Length: 1086 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640930280
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_001467556
• Protein GI: 157164628
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG0439] Biotin carboxylase; [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAA GAACAGATAT AAATACCATT TTACTAATCG GCTCAGGCCC TATCGTAATC 
GGTCAAGCCT GCGAATTTGA CTACTCAGGC ACGCAAGCAG CCAAGACGCT AAAAGAGCTT 
GGATACCGCG TAGTGCTTAT CAACTCAAAC CCAGCCACCA TCATGACTGA CCCAAATTTC 
GCCGACGCAA CGTATATAGA GCCGATCACA AAAGATAGCA TTTTAAGGAT CATTGAAAAA 
GAAAAGATTG ATGCTATCTT GCCAACGATG GGCGGTCAAG TGGCGCTAAA TGCCGCTATG 
GAGGTCTTTG AGAGCGGCCT TTTAAAGGAT GTTAAATTTC TTGGTGCAAA CCCAGAAGCG 
ATAAAAAAGG GCGAAGATAG ACAAATTTTT AAAGCGACCA TGCAAAAGAT CGGCATGGAC 
CTGCCTGAGA GTAGATATGC TTATAACATG GACGACGCGC TAAATGCGGC AAACGAGATA 
GGCTTTCCGC TCATCATAAG AGCTAGCTAC ACGCTTGGTG GCGCAGGAAG CGGCGTGGCT 
TACAATATGG ACGAATTTAA AGAGCTAGCT AACACCGGCC TTGACGCAAG CCCGATACAT 
GAAATTTTGA TAGAAGAGAG CTTGCTTGGC TGGAAAGAGT ATGAGATGGA GGTCATTAGA 
GATAGAAATG ACAACTGCAT CATCGTCTGC TCGATCGAAA ATTTCGACCC AATGGGCGTG 
CATACAGGCG ATAGCATCAC GGTTGCACCA GCACTCACAC TCACAGACAA AGAGTATCAG 
GCTATGCGTG ACGCTAGCTT TGCCATACTT CGCGAGATAG GCGTTGATAC GGGCGGCAGC 
AACGTGCAGT TTGCCATAGA CCCAAAAACT GGCCGTATGA TCGTTATCGA GATGAACCCA 
CGCGTGAGCC GAAGCTCAGC ACTAGCAAGT AAAGCTACTG GCTATCCGAT CGCAAAGGTA 
GCGACGCTGC TTGCAGTTGG TTTTAGCCTA GATGAGATCA AAAATGATAT CACAGGCACG 
CCTGCTAGCT TTGAGCCGGT GATCGATTAC ATCGTGACAA AGATCCCGCG TTTTACATTT 
GAGAAATTCC CAGGATCAAA CCCATATCTA GGCACTGCGA TGAAGTCAGT TGGCGAGGTT 
ATGGCGATAG GTAGGACATT TAAAGAGAGT ATCCAAAAGG CGCTTTGCAG CCTAGAGCGT 
GATCTTTGCG GATTTAACAG CCTTAGCCTA GAGAAAAACG CTTTGATTTA TGGCATCAGA 
AATGCAAATG AGAGAAGAAT TTTATATCTA GCACAAGCAT TTAGAGATGG CTTTAGCGTG 
GCTGAGGTGC ATGAGTTTAG CAAGATCGAT CCTTGGTTTT TGGAGCAAAT TTATGAGATA 
GTTAAATTTG AAGATAAGAT AGACATGGAT ATCTTAAACA ACGAAGTGCT GTTGCGAGAG 
GCCAAAAGCA TGGGCTTTTC AGACAAGATG ATAGCTGTGC TTATAAATGA AAAAGACGAT 
CTTGAGCTTA GCCAAAACGA TATCTATTTT GCGAGAGAGA AGCTTGGCAT CGAGCTTGAA 
TACAATGAAG TCGATACTTG TGCGGGCGAA TTTAAGGCAC TAACGCCGTA TCTTTACTCA 
TCTACAAATA TCACTAAATT TCCTAAAAAA GAGCTGGCAA AAGATGCTAA AAAGGTGATG 
ATAATAGGCG GCGGTCCAAA TAGGATAGGC CAGGGCATAG AGTTTGACTA CTGCTGCGTG 
CATGCAAGCT ACGCCCTAAG AGACCTTGGC ATAAAGACGA TAATGTATAA CTGCAACCCA 
GAAACCGTCT CAACCGACTA CGACACGAGC GATATTTTGT ACTTTGAGCC GATCGATTTT 
GAGCACGTTA GATCAGTCAT CGAGCGTGAA AAGCCAGACG GCGTGATCGT GCATTTTGGT 
GGCCAAACTC CGCTTAAATT TGCAAAGCGC CTAAGTGTGA TCGGCGCAAA GATCATCGGC 
ACAACTGCAA GAGTGATCGA CGTGGCTGAG GATAGAAAGA AATTTAGCGA ATTTATAAAT 
AAAATAGGCG TCCTTCAGCC TAAAAACGAC ACCGCCACTA GCTTAGAAGA AGCCTTGCAA 
AAGGCCGCGA CTATTGGCTA TCCGGTGCTT GTTCGCCCAA GCTACGTACT TGGTGGCAGG 
GCGATGAGAA GGGTGCATAA CGAGAGCGAG CTAAAAGAGT ATATGAGCGA GGCGGTAAAG 
GTTAGCAACC ACTCGCCAGT GCTACTTGAT AAATTTTTAC AAGACGCAAA AGAGCTCGAC 
GTAGACGCGA TATGTGACGG CAAAGAGGTC TATATAGGTG CGATAATGGA GCACATCGAG 
GAGGCTGGAA TTCACTCGGG CGACTCAGCT TGCATATTGC CACCGATGAG CTTAAGCGAT 
GAAATGATAA AAAAAGTGGA GAGGCAAACC AGAGATATTG CGCTAAATTT AGGCGTTGTC 
GGCCTTATGA ATATCCAGTT TGCTATCTAT GAAAACGAGC TTTATATGAT CGAGGTAAAT 
CCTCGCGCAA GCAGGACTGT GCCGTTTGTG AGCAAGGCTA CTGGCGTGCC TATGGCAAAG 
GTGGCAACAA GAGTTATGTG GCAAGGAAAT TTACGTGAGG CGCTTAAATT TTATGATGAT 
TACAAGGTCG TTTATGAAGA TGGCGACATC CTAAAACCTC GCGTAAGCTC GCATGTTTGT 
GTAAAAGAGT GCGTGCTGCC GTTTAACAAG CTAAGTGGAG CTGATCTCAT CCTTGGCCCT 
GAGATGAAGA GCACAGGCGA GGTCATGGGT ATAAGCCACG ACTTTGCAAG CTCGTTTGCA 
AAGAGCCAGA TCGCTGCGAG CAACACTTTG CCAAGCAAGG GCAGGGTATT TTTAACGCTG 
GCTGATGGCG ACAAGTCTTA CGCACCAGAC CTTGCAAAAG ATCTTATAGC GCTTGGCTTT 
AGCGTCATCG CAACTGGTGG TACGCATAAA ATTTTAACCG AAGCTGGCGT GGAGGCTGAG 
TTCGTCTATA AGATAAGCGA AGGCAGACCA AACGTAGAAG ATAGGCTTAA AAACGGCGAT 
ATCGCGCTTG TTATAAATAC AAGCGATACT AAATCAAGCG TGGATGATGG CAAAAAGATC 
CGCCAAAATG TACTTAGATT TAAGATCCCT TACTTCACAA CGATCCGCGC AGCGCTCGCA 
GCTGCTAAGT CGCTAAGCAC AGTTCAAACT GGCAAAGCAC TCGAAGTAAA AAGCTTGCAA 
GAATATCTAA ACCAGAGATA G 

 

Protein sequence

MPKRTDINTI LLIGSGPIVI GQACEFDYSG TQAAKTLKEL GYRVVLINSN PATIMTDPNF 
ADATYIEPIT KDSILRIIEK EKIDAILPTM GGQVALNAAM EVFESGLLKD VKFLGANPEA 
IKKGEDRQIF KATMQKIGMD LPESRYAYNM DDALNAANEI GFPLIIRASY TLGGAGSGVA 
YNMDEFKELA NTGLDASPIH EILIEESLLG WKEYEMEVIR DRNDNCIIVC SIENFDPMGV 
HTGDSITVAP ALTLTDKEYQ AMRDASFAIL REIGVDTGGS NVQFAIDPKT GRMIVIEMNP 
RVSRSSALAS KATGYPIAKV ATLLAVGFSL DEIKNDITGT PASFEPVIDY IVTKIPRFTF 
EKFPGSNPYL GTAMKSVGEV MAIGRTFKES IQKALCSLER DLCGFNSLSL EKNALIYGIR 
NANERRILYL AQAFRDGFSV AEVHEFSKID PWFLEQIYEI VKFEDKIDMD ILNNEVLLRE 
AKSMGFSDKM IAVLINEKDD LELSQNDIYF AREKLGIELE YNEVDTCAGE FKALTPYLYS 
STNITKFPKK ELAKDAKKVM IIGGGPNRIG QGIEFDYCCV HASYALRDLG IKTIMYNCNP 
ETVSTDYDTS DILYFEPIDF EHVRSVIERE KPDGVIVHFG GQTPLKFAKR LSVIGAKIIG 
TTARVIDVAE DRKKFSEFIN KIGVLQPKND TATSLEEALQ KAATIGYPVL VRPSYVLGGR 
AMRRVHNESE LKEYMSEAVK VSNHSPVLLD KFLQDAKELD VDAICDGKEV YIGAIMEHIE 
EAGIHSGDSA CILPPMSLSD EMIKKVERQT RDIALNLGVV GLMNIQFAIY ENELYMIEVN 
PRASRTVPFV SKATGVPMAK VATRVMWQGN LREALKFYDD YKVVYEDGDI LKPRVSSHVC 
VKECVLPFNK LSGADLILGP EMKSTGEVMG ISHDFASSFA KSQIAASNTL PSKGRVFLTL 
ADGDKSYAPD LAKDLIALGF SVIATGGTHK ILTEAGVEAE FVYKISEGRP NVEDRLKNGD 
IALVINTSDT KSSVDDGKKI RQNVLRFKIP YFTTIRAALA AAKSLSTVQT GKALEVKSLQ 
EYLNQR