| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1885 |
|---|
| Symbol | |
|---|
| ID | 5597670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 2022177 |
|---|
| End bp | 2022950 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640930560 |
|---|
| Product | putative peptide ABC transporter, permease protein |
|---|
| Protein accession | YP_001467825 |
|---|
| Protein GI | 157165467 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0639352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA CAAGACTAAA TAAATTTATC TCACATAACA CAAACTACTC ACGCCGTGAG
GCAGATGAGC TGATAAAAGC TGGCAAGGTT AGCATAGCAG GGCGTGTGGT TAGCGACCTT
GCTACAAGCG TGGATGAAGA TGACAAAGTG CGTATAAATG GCCGTTTGAT AAAGCTAAAA
AAAGAATTTA CTGTTATCGT TTATCACAAA CAAAAGGGCG AGCTAGTTAG CAAAAAAGAT
GACCGCGGAC GAAAGACGAT ATATGACACG TTAGATAAGA AATTTGCAAA ATTTGTTAGC
GTAGGACGCT TAGACTACGC AAGCGAAGGG CTACTTTTGC TAACTGACGC TCCAGCGATC
GCCACAGCAC TCATGAATAG CGACTTAGAG CGCGAATACT ACCTAAAAGT AAAGGGCGAA
ATTTCAAAAG AGGTGATAGA GGCGATGACA AATGGCTTTT TCGCCAAGGA CGCCACCAAA
GGCGCGCACG CAAAAACCAC TATAAAATCA ATGGAATTTA AGCCATTTCT AGCCTATAAA
GTCTTTGGCT CAAGCGGTGG CTACACAAAA CTAAAGGTCA TCATCAACGA GGGTCAAAAC
AGAGAGCTAC GCCGTTTCTT TGGCTACTTT GACCTTGAAG TGATGGACCT AAAACGTGTT
AGCTTTGGGC GTGTTAGCCT TGATATGCTA AAGCCTGGCA AATGGCGCTA CTTCGAAAAT
AGCGAATACG AAGACCTAAG AGACTTTTTG AAAGTTAATA ACGTTAGATA CTAA
|
|---|
| Protein sequence | MEKTRLNKFI SHNTNYSRRE ADELIKAGKV SIAGRVVSDL ATSVDEDDKV RINGRLIKLK
KEFTVIVYHK QKGELVSKKD DRGRKTIYDT LDKKFAKFVS VGRLDYASEG LLLLTDAPAI
ATALMNSDLE REYYLKVKGE ISKEVIEAMT NGFFAKDATK GAHAKTTIKS MEFKPFLAYK
VFGSSGGYTK LKVIINEGQN RELRRFFGYF DLEVMDLKRV SFGRVSLDML KPGKWRYFEN
SEYEDLRDFL KVNNVRY
|
|---|
| |