| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1591 |
|---|
| Symbol | fliF |
|---|
| ID | 5597678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 574708 |
|---|
| End bp | 576405 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640929154 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_001466462 |
|---|
| Protein GI | 157165014 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTA AGGCATTACT TCATCAAATA AGTCAAATTT ATCAAAAGCT TTCACTAAAG
CAAAAGATCG TCGCAGGCAG CTCGATCGTC TTAGTTGTGG CTTTTTTGGT ATTTTTAACG
CTTTACAAAA GCAAAAGTGA TAGCTTTGTA GGATATAGCG TCCTTTTTGA AAACATCAGC
CCAAGCGACT CAGCCTTAAT AGTTGATCAG CTAAACAAAG ATGGCATCAA GTATAAATTA
GCAAATGAAG GCACTATTCT CGTGCCAACT AGCGATGTAT ATAAAGAGCG TATCGCTGTT
GCAACGCTTG GCATACCAAA AGAGAGCAAG ATCGGTTTTG AAATTTTTGA CAAGCAAGAA
TTTGGAGCAA CGGACGCCGA GCAGAGAGTT AAATTTCAAA GAGCGCTTGA GGGTGAGCTA
GCTAGAACGA TCGAGAGCCT CTCATCTATC CAAAAAGCAA CCGTAAGAAT AGCCATACCA
AAAGAGAGCG TCTTTACTGA AAGACAAGCA CTTCCGACCG CTTCTATCGT CGTTGAGCTA
AAGCCAGGCG TTAGTCTAAA TGCGAAGCAA ATTTTTGGCA TTAAAAACCT AGTTGCCGCC
TCTGTTACAA ATTTAAGCAC CGAAAATGTC AAGATAGTAA ATCAAGATGG CGTTGCACTT
GGCGATGAAG ACGGTGAATT TGATAGTGAT GCCATAGCTC AGCAGATCCG CTATAAGCGC
GAGTTTGAAA ATAATTACGA GCAAAAGATC GTAAATGTCC TAGCTCCTAT CGTGGGCGGG
GCAGATAAGG TCGTAGCGAA GGTAAATATC GACTTTGACT TTGATAAAAA AGATACAAAA
AGCGAGGTTT ATGACCCAAA TAACGTCGTA AGAAGCGAGA GCAACATCGA AGAAAAGCGC
CAAGGCTCGG CTCCAAATGA AGTAGGCGGC GTACCAGGTG CGGTTAGTAA TATAGGCCCT
GTTCAAGGGC TAGATGACAG CACTTTAAAA GAGCAGTACA ACAAAAGCTC GCAGCAGACA
AACTACGAAA TTTCAAAGAA AGTGACAAAT GTCAAAGGGC AGTTTGCTAG CATAAACAGA
GTGAGCGCAG CTGTCGTTAT AGACGGACTT TATCAAAGCA AAAAGGATAA AGACGGCAAA
CCAACTGGCG AGCTTGAATT TGCTCCGCTT ACCAAAGAGC AAAGAGAATC AATCACAAAT
TTAATCAAAC AATCAATCGG CTACAATCAA AATAGAGGCG ATGAGGTAAG CTTAGATAAC
TTTGAGTTTA AAACTGGCAA AGATGTCAGC ACTGGCGAGA AGATGGATGG CTTTATGAAC
AACTACGTGA TGCCTTTCTT GCCGCTACTT AAATACATCT TTGCAGCACT GCTACTTTAC
ATCTTCTACA AAAAAGTCAT CGTGCCATTT ATGCAAAAGA TGCTTGAAGA GACGAAAGAA
GAAGAGGAGC AAGCCCAGGA CGATCTTGAA GAGATCGAGA TGGATGCAGA AGATACGCTC
GAGAAATTTA AAGCCGCTCG TAAGAAAGTC GAGGAGCAGC TTGGCCTTAG CGGTGAATTT
AACGAGGACG AGCTAAAATA CGACGTGCTT CTTGAAAAGA TGAAGATAGT AGTCACCGAG
CGAAGTGAGG AAATTTCAAA TTTACTCCAA GATATGGTTA AAAACGATAG TGAATTTAAC
ATGCGTAAGG AAATTTGA
|
|---|
| Protein sequence | MDFKALLHQI SQIYQKLSLK QKIVAGSSIV LVVAFLVFLT LYKSKSDSFV GYSVLFENIS
PSDSALIVDQ LNKDGIKYKL ANEGTILVPT SDVYKERIAV ATLGIPKESK IGFEIFDKQE
FGATDAEQRV KFQRALEGEL ARTIESLSSI QKATVRIAIP KESVFTERQA LPTASIVVEL
KPGVSLNAKQ IFGIKNLVAA SVTNLSTENV KIVNQDGVAL GDEDGEFDSD AIAQQIRYKR
EFENNYEQKI VNVLAPIVGG ADKVVAKVNI DFDFDKKDTK SEVYDPNNVV RSESNIEEKR
QGSAPNEVGG VPGAVSNIGP VQGLDDSTLK EQYNKSSQQT NYEISKKVTN VKGQFASINR
VSAAVVIDGL YQSKKDKDGK PTGELEFAPL TKEQRESITN LIKQSIGYNQ NRGDEVSLDN
FEFKTGKDVS TGEKMDGFMN NYVMPFLPLL KYIFAALLLY IFYKKVIVPF MQKMLEETKE
EEEQAQDDLE EIEMDAEDTL EKFKAARKKV EEQLGLSGEF NEDELKYDVL LEKMKIVVTE
RSEEISNLLQ DMVKNDSEFN MRKEI
|
|---|
| |