Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CCC13826_1425 |
Symbol | cas |
ID | 5596316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter concisus 13826 |
Kingdom | Bacteria |
Replicon accession | NC_009802 |
Strand | + |
Start bp | 1146472 |
End bp | 1147470 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640929697 |
Product | CRISPR-associated protein Cas1 |
Protein accession | YP_001466979 |
Protein GI | 157164052 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 [TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00327845 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAGA GCGACAGGAC GCACTTTATA CTTAGTCCAG GTAGGCTTTA TAGACAAGAC AACAATATCT ACTTTGAAAA ATTTTACGAA ACGGGCGCGC TTGTCGCTAG TAAAATTTTG CCGGTAAATG CGATCGATGA AATTTACATG CTGGCAAAGG TGCAGATCGA TACCTACACC ATCGCGTTTT TGGCGGATAA TAACATCCTT TTACACATCT TTAGCCCGTA TCAGAGCTTT CGCGGGAATT TCTACCCAAA CACGCCAAAC TCTGTAAATA AAAGCGGCTT TGTATTGCTG TGCCAGCTCC GCTCATTTGA TGATGCGATC AAACGTGCAT ATATCGCGCG CGAGATCACT AGAACTCACA TCATAAATGA CGCCGCAAAC TGCAAAAGAC ACGGCGTGAA ATTTGACGTG CAGCCTCACA TAAAGGCACT AGATGCGGCC ACTAGCGTGC CTGCTATCAT GGCGGTAGAG GGTGCATTTC AAAAGCTCTA CTACGAAAAG TGGAACGAGA TCATCGCAGA TCAGCGAAGC TTTAAATTTA CCGTCCGCTC AAAACGCCCG CCAGCTGATA AGATAAATAG CTTTATAAGC TACGTAAATA CACGTATCTA CAACATCTGC CTAAGCGAAA TTTACAAGAC CGAGCTAGAT CCTCGCATCG GCTTTTTGCA CGAGCCAAAC TACCGCGCGC TAAGCCTTCA CCTCGACCTT GCGGAGATTT TTAAGCCGAT CTTGGGCGAT ACGCTGATTT TTAATATGCT AAATAAAAAA GAGATCACCG CAAAGGACTT CCAAACGGAC GCTGGCAGGA TAAAATTTAG CAAAGACGCC GTGCAAAAGA TCGAGCTAAA GATGATCTCG CGCCTTTGTG AGACGCTCAC GGTGGGTGGT AGGGAGCTAA CGTGGAGGCA GGTGATCCGC CGCGAAGTAA ACAAGCTCAA AAAGTGCATC TGCGAGGACG CGCCTTATGA AGGCTTTAGG TGGGAGTGA
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Protein sequence | MQKSDRTHFI LSPGRLYRQD NNIYFEKFYE TGALVASKIL PVNAIDEIYM LAKVQIDTYT IAFLADNNIL LHIFSPYQSF RGNFYPNTPN SVNKSGFVLL CQLRSFDDAI KRAYIAREIT RTHIINDAAN CKRHGVKFDV QPHIKALDAA TSVPAIMAVE GAFQKLYYEK WNEIIADQRS FKFTVRSKRP PADKINSFIS YVNTRIYNIC LSEIYKTELD PRIGFLHEPN YRALSLHLDL AEIFKPILGD TLIFNMLNKK EITAKDFQTD AGRIKFSKDA VQKIELKMIS RLCETLTVGG RELTWRQVIR REVNKLKKCI CEDAPYEGFR WE
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