Gene CCC13826_1273 details

Gene Information

• Locus tag: CCC13826_1273
• Symbol: speA
• ID: 5596873
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter concisus 13826
• Kingdom: Bacteria
• Replicon accession: NC_009802
• Strand: +
• Start bp: 1008991
• End bp: 1010826
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640929569
• Product: arginine decarboxylase
• Protein accession: YP_001466860
• Protein GI: 157165425
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0487343
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGATT TTGGACTTAG CATTTGGGGC AATTCAAATT TTGTGATAGA AGATGGCAAA 
GTCTGCATAA ACGAAGCTAG TAAGCCAGCG ATCATCGACA TCGTGCGTGA TATTAGGGAC 
GACGGATATA GAGGGCCGCT ACTACTTCGC TTTCCGCACC TTATCCAAAA GCAGATCGAG 
CAGATCCACG CAAGTTTTGC AAAGGCAAAG AAAGAGTTTG CCTACAAAGG CAGCTTTAAC 
GCCGTTTTCC CGCTTAAAGT CAATCAATAC CCTGGCTTTG TAAAAAACCT AGTACGCCTT 
GGCAAGCCCT ATAACTACGG CCTTGAGGCT GGTAGCAAGG CTGAGCTACT TCTAACTATG 
GCTTATAACA ACGACAAAGC GCCTATAACA GTAAATGGCT TTAAAGATAA AGAGATGATC 
AATATAGGCT TTATAGCCGC TGAAATGGGG CATAATATCA CGCTAACGAT CGAGGGCTTA 
AACGAGCTTG AAGCGATAAT CGCCATCGCA AAAGAGCGCT TTAAACCAAA ACCAAAGATC 
GGACTACGTA TAAGGCTGCA CTCGACAGGA TCGGGGCTCT GGGCAAAAAG TGGCGGCATT 
CACTCTAAAT TTGGCCTAAC ATCAACCGAG CTAATAGAAG CTGTAAAAAT GCTAAAAAAG 
GCAAATTTAC TTGAAAACTT CACGATGATA CACTTTCACA TCGGCTCTCA AATAAGCGAG 
ATCCATCCGC TCAAAAAAGC ACTCATCGAG GCTGGCAACA TCTACGCTGA GCTTAGAAAA 
ATGGGTGCAA CAAATTTAAA AGCTATAAAT TTAGGTGGTG GCCTTGCGAT CGAGTACTCG 
CAGTTTAAAG AGGAGAGCAG CAGAAACTAC ACGCTAAACG AATACGCAAA CGACGTTGTT 
TATATGCTTA AAACCATAAG CGAGCAAAAA AAGGAGATCG AGCCAGATAT TTTCATAGAG 
TCAGGTCGCT ACATCGCCGC TTCTCACGCA CTTTTAGTCG CTCCTGTGCT TGAGCTTTTT 
TCTCAAGAAT ACACCGAAGA GAAGCTAAAT TTAAAGAAAA ACAATCCAAA TTTAATAACA 
GAGCTAGTTG ATCTTTACAA GTCAATCAAG CCTTCAAACG CCCTAGAGTA CCTGCACGAC 
GCCATCCACC ACACAGAGAG CGTGCTAACA CTTTTTGATC TAGGATATGT CGATCTGCAA 
GATAGATCAA ACGCAGAGGT GCTTTTAAGG CTCATTAGCA AAAAAGCTGT CGTGATGCTT 
GGCAACAAGA GCAATTCAAG CGATCTAACT AAAATTCAAA AAGAGGTTCA AGAGAGATAC 
CTGCTAAATT TCTCGATCTT TCAAAGCTTG CCAGACTTTT GGGGACTAAA GCAAAATTTC 
CCTATCATGC CACTTGACAG GCTTGATGAG CGCCCTACTC TGCCAGCTTC GATCTGGGAC 
ATAACTTGCG ATAGCGACGG CGAGATCAGC TATGATGACG AGAAAAACCC ACTGCTTTTG 
CACGATGTGG ATGTGGAGAA GGAGGATTAT TTCTTGGGAT TTTTCCTAGT TGGCGCATAT 
CAAGAGGTAA TCGGCATGAA ACACAATCTC TTTACTCATC CGACAGAAGC TACCGTGGAG 
ATAACAAGCG ATGGCTACAA GATCACAAAT TTACTAGAGA GCCAGTCGAT CCTTGATATC 
ATGGAGGACA TGGACTACGA TATCTACGAG ATCCAAGACA CTCTAAATGA GCGCTTAGAA 
AAATCAACTC TAATAAACGA AACACAAAAG AAGCAAATTT TGGGCGAACT TTATCTATTT 
TTAAATGACA ATAGCTACTT AAAGACAATC AACTAA 

 

Protein sequence

MNDFGLSIWG NSNFVIEDGK VCINEASKPA IIDIVRDIRD DGYRGPLLLR FPHLIQKQIE 
QIHASFAKAK KEFAYKGSFN AVFPLKVNQY PGFVKNLVRL GKPYNYGLEA GSKAELLLTM 
AYNNDKAPIT VNGFKDKEMI NIGFIAAEMG HNITLTIEGL NELEAIIAIA KERFKPKPKI 
GLRIRLHSTG SGLWAKSGGI HSKFGLTSTE LIEAVKMLKK ANLLENFTMI HFHIGSQISE 
IHPLKKALIE AGNIYAELRK MGATNLKAIN LGGGLAIEYS QFKEESSRNY TLNEYANDVV 
YMLKTISEQK KEIEPDIFIE SGRYIAASHA LLVAPVLELF SQEYTEEKLN LKKNNPNLIT 
ELVDLYKSIK PSNALEYLHD AIHHTESVLT LFDLGYVDLQ DRSNAEVLLR LISKKAVVML 
GNKSNSSDLT KIQKEVQERY LLNFSIFQSL PDFWGLKQNF PIMPLDRLDE RPTLPASIWD 
ITCDSDGEIS YDDEKNPLLL HDVDVEKEDY FLGFFLVGAY QEVIGMKHNL FTHPTEATVE 
ITSDGYKITN LLESQSILDI MEDMDYDIYE IQDTLNERLE KSTLINETQK KQILGELYLF 
LNDNSYLKTI N