| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_0686 |
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| Symbol | |
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| ID | 5596510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | + |
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| Start bp | 726896 |
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| End bp | 729922 |
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| Gene Length | 3027 bp |
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| Protein Length | 1008 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640929296 |
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| Product | RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) and heavy metal efflux (HME) families, permease protein |
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| Protein accession | YP_001466592 |
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| Protein GI | 157165028 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.204184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAAA CAGCCATAAA CCGCCCCATA ACTACGCTTA TGATATTTTT AAGCCTCGTT
GTCTTTGGCA TCTACTCGCT AAAGACGATG AATGTAAATT TATATCCGCA AGTAAATATC
CCGATCGTTA AGATCACAAC CTACGCAAAC GGCGATATGA ACTACATCAA GACAAAGATC
ACGCAAAAGA TCGAGGACGA GGTCTCAAGC ATAGAGGGGA TAAAAAAGCT TTACTCAACT
AGCTTTGACA ACCTAAGCGT GGTAAGCATC GAATTTGAGC TAAACAAAGA CCTAGAGAGC
GCTACAAACG ACGTCCGTGA CAAGATGCAA AAGGCAAGAT TAAACGCAAA CTACGAGATA
GAAAAGCTAA ATGGCCTCTC TTCAGCTGTC TTTAGCCTCT TTATCACAAG GCTTGATGGT
AACGAAACTA AGCTCATGCA AGAGATCGAT GATGTGGCAA AGCCATTTTT AGAGCGCATA
AGCGGCGTTT CAAAGGTTAA GACAAATGGC TTTTTAGAGC CAGCGGTGAA AATTTTACTA
GATAGATTTA AGCTTGATAA AAACGCTCTT AGCGCAAACG AAGTGGCAAA TTTGATAAAG
GTTGAAAATT TAAAAGCGCC ACTTGGCAAG ATAGAAAATG AAAAAATCCA AATGGCGATC
AAGTCAAATT TCAGTGCCAA AAGCATAGAT GAGATAAGAA ATTTAACGAT CAAACAAGGG
GTCTTTTTAA AAGATATCGC AAGTGTTGAT CTTGCTTACA AAGACGCAAA CGAAGCAGCG
ATAATGGATA AAAAAAGTGG CGTCTTGCTT GGCCTTGAGC TAGCCCCAGA TGCAAATGCT
CTAACCGTGA TCGCTCTAGC TAAAGCAAAA CTAGATCAGT TTAAAAGCCT GCTTGGCAAT
GAATACGACG TAAAAATAGC TTACGATAAG AGCGAAGTGA TACAAAAGCA CATCGATCAA
ACCGCCTTTG ATATGATCCT TGGCGTCTTG CTAACCATCG TGATCGTCTA TCTATTTTTA
AGAAATTTCT CGATCACCAT CATCTCAGTC GTAGCTATAC CAACTAGCAT CGTAGCGACA
TTTTTCATCA TAAATGCCCT AGGCTACGAC ATAAACCGCC TAAGCCTCAT AGCGCTCACA
CTTGGCATCG GAATTTTCAT CGACGATGCG ATAGTTGTCA CTGAAAATAT CGCTAGCAAG
CTAAAAGATG AGCCAAATGC CCTAAAAGCA AGCTTTACAG GCATAAAAGA GATAGCATTT
AGCGTCTTTG CGATCTCGCT CGTGCTACTT TGCGTCTTTG TGCCTATCGC CTTTATGAGC
GGCATCGTTG GCAAGTACTT TAACTCCTTT GCGATGAGCG TGGCAGCTGG TATCGTCATC
TCGTTTTTTG TGAGCATCTT TCTCGTGCCA ACGCTTAGTG CTAGGTTTGT AAATGCCAAA
GAAAGCAGCT TTTATATAAA GGGTGAGCCA TTTTTTGAGG CGCTGGAAAA TTTCTATGAG
AAAATTTTGA CCTTGGCGCT TAAATTTAAG CTTTTATTTC TAGCTGCGAC GCTTTTGGTC
GTTGTTTGTT CATTTGCTCT GGCTAAATTT GTAGGAGGTG ACTTCATGCC AAGCGAGGAT
AACTCGGAGT TTAACATCTA CTTTAAGCTC GATCCCTCAC TTAGCCTGCA AGCTAGCAAA
GAGAGGCTAA AAGATAAAAT TTCACTCATA AACGCCGATC CTCAGGTCGC TTACGCCTAC
TTCATTCTTG GCTACACAGA TGCCAAGCAG CCTTATCTTG TAAAGGCTTA CGTTAGGTTA
AAAGAGCTAA AAGATAGAGC TAACCACGAG CGGCAAAACG CTATCATGCA GAGGTTTCGT
GACAAGCTAA AAAGTGATGA CATGAGCGTC ATCGTGGCCG ATCTGCCAGT GGTTGAGGGT
GGCGATGTGC AGCCAGTTAA GCTTACTATC ACCTCTGAAA ATGGCAAAGA GCTAGAGAAA
TTTGTGCCAA AGATCAGCAA GATACTAAAA GAGATAAACG ACGCAACAGA CGTAAATTCG
CCCGAAGAAG ATCTGCTAAA ACGCGTGCAA ATCTCTATCG ACGAGGATAA GGCTAAGAGG
CTAAATTTAG ACAAAGCCAG CGTTGCAAGC GCCGTTTATA GCGCATTTAG CCAGAACGAG
GTCTCTGTTT TTGAAAATGA AAATGGCAAA GAGTATGAGC TTTACATGCG CCTTGATGAT
AAATTTAGAA GCGATACAAA TGATATCTTA AAGACCAAGA TAAGAAGCAA TGAGGGCTTT
TTCGTCACAC TTGGCGATGT GGCGACGATT AGTTTTGAGC AAAAGCCAGC TAGTATTTCA
AGGTTTAATA GAGCCGATGA GATCAAATTT CTAGCAAATA CCAAAAACAA CGCTCCGCTA
AATAGCGTGG CAAATGAAAT TTCAAAGAAG CTTGATGAAA TTTTGCCAGC AAATTTCAAG
TATAAATTCC TTGGATTTGT CGAGCTCATG GATGATACAA ACGCTTCGTT TATCTTTACG
GTAAGTGCTA GCGCGGTGCT TATTTACATG GTGCTTGCTG CACTTTATGA GAGCTTTTTG
CTGCCATTTC TCATTATGCT TGCCATGCCG CTTGCCTTTT GTGGCGTCGT GATCGGACTT
TTTATAAGCG GCAATCCATT TAGCCTATTT GTCATGGTTG GCGTCATCTT GCTCTTTGGC
ATGGTCGGCA AGAACGCCAT TTTGGTGGTT GATTTTGCAA ACCACTTTGC AAATAGCGGC
ATGGAGGCAA ACGAAGCTGT GAAAATGGCT GCTAAAAAGC GACTAAGGGC TGTTATGATG
ACCACCTTTG CGATGATATT TGCCATGCTG CCTCTTGCAC TTAGCAGGGG TGCTGGCTAT
GAGGCCAACT CACCTATGGC TATAAGCATC ATCTTTGGGC TCATTAGCTC GACTTTGCTA
AGCTTGCTTG TCGTGCCAGT GCTTTTTGCA TGGGTCTATA ATCTTGATAA ATTTATAAGA
AAATTTTATG AAAGGGAGAG AATTTGA
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| Protein sequence | MIKTAINRPI TTLMIFLSLV VFGIYSLKTM NVNLYPQVNI PIVKITTYAN GDMNYIKTKI
TQKIEDEVSS IEGIKKLYST SFDNLSVVSI EFELNKDLES ATNDVRDKMQ KARLNANYEI
EKLNGLSSAV FSLFITRLDG NETKLMQEID DVAKPFLERI SGVSKVKTNG FLEPAVKILL
DRFKLDKNAL SANEVANLIK VENLKAPLGK IENEKIQMAI KSNFSAKSID EIRNLTIKQG
VFLKDIASVD LAYKDANEAA IMDKKSGVLL GLELAPDANA LTVIALAKAK LDQFKSLLGN
EYDVKIAYDK SEVIQKHIDQ TAFDMILGVL LTIVIVYLFL RNFSITIISV VAIPTSIVAT
FFIINALGYD INRLSLIALT LGIGIFIDDA IVVTENIASK LKDEPNALKA SFTGIKEIAF
SVFAISLVLL CVFVPIAFMS GIVGKYFNSF AMSVAAGIVI SFFVSIFLVP TLSARFVNAK
ESSFYIKGEP FFEALENFYE KILTLALKFK LLFLAATLLV VVCSFALAKF VGGDFMPSED
NSEFNIYFKL DPSLSLQASK ERLKDKISLI NADPQVAYAY FILGYTDAKQ PYLVKAYVRL
KELKDRANHE RQNAIMQRFR DKLKSDDMSV IVADLPVVEG GDVQPVKLTI TSENGKELEK
FVPKISKILK EINDATDVNS PEEDLLKRVQ ISIDEDKAKR LNLDKASVAS AVYSAFSQNE
VSVFENENGK EYELYMRLDD KFRSDTNDIL KTKIRSNEGF FVTLGDVATI SFEQKPASIS
RFNRADEIKF LANTKNNAPL NSVANEISKK LDEILPANFK YKFLGFVELM DDTNASFIFT
VSASAVLIYM VLAALYESFL LPFLIMLAMP LAFCGVVIGL FISGNPFSLF VMVGVILLFG
MVGKNAILVV DFANHFANSG MEANEAVKMA AKKRLRAVMM TTFAMIFAML PLALSRGAGY
EANSPMAISI IFGLISSTLL SLLVVPVLFA WVYNLDKFIR KFYERERI
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