| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_0373 |
|---|
| Symbol | sppA |
|---|
| ID | 5596687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 1377288 |
|---|
| End bp | 1378151 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640929941 |
|---|
| Product | signal peptide peptidase SppA, 36K type |
|---|
| Protein accession | YP_001467221 |
|---|
| Protein GI | 157164394 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0119133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAAATTT TAAGGCTTAT TTTTAGAGGA ATTTTGGGAA TTTTTAAATT TATAAATAAC
TACTTTAAGG CGCTCATATT TTTACTCATA TTATTTTTTA TTTTCGCGCC AGATAGCAAG
ATAAAAGAGC CAAATTTAGC CCGTATCGAC ATCACCGGCA CGATAGTAGA TACTAGTGAA
ATTTTAGACG AGCTCGAAAA AGCAAGGCTG GATAGCAACA TCAAAGGCGT GCTACTCTAC
ATCGACAGTC CAGGCGGCGC GCTAAGCCCG AGCGTGGAGC TAGCCATGGC GGTCAAGCGA
CTAAAAGAGA GCAAAAAAGT GCTCGCATAC GCAGCTGGCA ACATGGCGAG TGGTAGCTAC
TATGCTGGCG TAAATGCCGA CGCCATCATC GCAAACCCAG GCGCTTTCAT CGGCTCGATC
GGCGTCATCA TGCAAGGGGC AAACATCGAA AATTTAGCCA AAAATTTAGG CGTGAGCGAG
CAGGTAGTGA AGGCTGGCGA GTTTAAAGAG GCCGGCACCT TTATGAGGAG CTGGAGCAAG
CAGGAGCGTG AGAGCTTGCA AGGGCTCGTA AATGACGCTT ACATGCTCTT TGTAAGCGAC
GTGGCGGAGG CTAGAAATTT AGACATCAAG AAAAAAGACG AGTGGGCAAA CGCAAGGGTC
TTTTTGGCGC ACAATGCCCT AAAAATGGGG CTAATAGATA GCCTTGGTAG CTACATAGAC
GCTCAAAATG AGCTAGCTAA AATGAGCCTC GTAGATGAGC CCGTCTGGCA AGAAAAACCT
CAGCTCGAAA AGATAATGGA GAAATTTACA AAGCAAGGTA TAAACTCGCT TTTTAATGCA
TTTTTCGAGA CAAAGCTTAG ATAA
|
|---|
| Protein sequence | MQILRLIFRG ILGIFKFINN YFKALIFLLI LFFIFAPDSK IKEPNLARID ITGTIVDTSE
ILDELEKARL DSNIKGVLLY IDSPGGALSP SVELAMAVKR LKESKKVLAY AAGNMASGSY
YAGVNADAII ANPGAFIGSI GVIMQGANIE NLAKNLGVSE QVVKAGEFKE AGTFMRSWSK
QERESLQGLV NDAYMLFVSD VAEARNLDIK KKDEWANARV FLAHNALKMG LIDSLGSYID
AQNELAKMSL VDEPVWQEKP QLEKIMEKFT KQGINSLFNA FFETKLR
|
|---|
| |