| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_0175 |
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| Symbol | rpoC |
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| ID | 5597449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | + |
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| Start bp | 664992 |
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| End bp | 669506 |
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| Gene Length | 4515 bp |
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| Protein Length | 1504 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640929242 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001466545 |
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| Protein GI | 157164541 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.494041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTAA CTAATTTAAA ACCAGTTGAG ATAAAAGAAG AGCATAGACC TCGTGATTTT
GAAGCTTTCC AACTTCGTTT AGCAAGTCCT GAGAAGATAA AATCTTGGAG TTATGGCGAG
GTTAAAAAAC CAGAAACTAT CAACTACCGC ACGCTAAAAC CTGAGCGTGA CGGCTTGTTT
TGTGCCAAAA TTTTCGGACC GATCCGTGAC TACGAGTGTC TTTGTGGTAA ATATAAAAAG
ATGCGCTATA AAGGTATCAA GTGTGAAAAG TGCGGCGTTG AAGTAACAAC ATCTAAGGTT
CGTCGCTCTC GCATGGGTCA TATCGAGCTT GTAACTCCAG TGGCTCACAT CTGGTATGTA
AATTTCTTGC CAAGCCGTAT AGGTGCGCTT CTTGGTATCA AGATGAAAGA CCTTGAGCGC
GTACTTTACT ATGAGGCATA CATTGTTGAT AATGCTGGCG AGGCTTACTA TGACAATGAA
AATTCTAAAA AAGTTGAAAA ATATGACGTT TTAAACGAGG AGCAATATCA AAGCCTAGCT
TCAAGATATG AAGAGACTGG CTTTACAGCA AGAATGGGTG GCGAGGTCAT CTATGATATG
CTAGCTGAGC TTGATCTAAC TCAAATTTTA AATCAACTAA AAGAAGAGAT GGAAGCTACA
AATTCTGAGG CTAAGAAAAA AACCATCGTA AAACGCCTAA AAGTTATCGA GAGCTTTTTA
AATTCAGGCA ACCGCCCAGA GTGGATGATG ATAACAAATT TACCAGTTCT TCCGCCTGAC
CTTAGACCAC TTGTTAATCT TGATGGCGGT AAATTTGCTG TTTCAGACGT AAACGACCTA
TATCGCCGTG TAATAAATAG AAATAGCCGT CTAAAACGCC TGCTTGAGCT TGACGCACCT
GAGATCATTA TCAGAAACGA AAAGAGAATG CTTCAAGAGG CTGTTGATGC ACTATTTGAT
AATGGCCGTA GAGCAAATGC AGTAAAAGGT GCAAATAAAC GCCCACTAAA ATCACTAAGT
GAGATCATCA AAGGTAAGCA AGGCCGCTTC CGTCAGAATT TGCTAGGTAA GCGTGTTGAT
TTCTCTGGAC GTTCTGTTAT CGTCGTTGGT CCAAAGCTAA AGATGGATCA GTGCGGTCTT
CCAAAGAAGA TGGCTTTAGA GCTATTTAAA CCACATTTGC TTGCTCGCCT TGAAGAAAAA
GGCTATGCGA CAACTGTTAA GCAAGCTAAA AAGATGATAG AAGATAAGAC AAATGAGGTT
TGGGAGTGCC TAGAAGAGGT CGTTAAAGAC TATCCAGTTA TGCTAAACCG TGCTCCGACA
CTTCACAAGC TCTCTATCCA GGCGTTTCAC CCAGTGCTTG TTGAGGGCAA GGCGATCCAG
CTTCACCCGT TAGTTTGTGC GGCGTTCAAC GCTGACTTTG ACGGCGACCA AATGGCTGTT
CACGTGCCAC TATCTCAAGA GGCTATCGCT GAGTGCAAAA TTTTGATGCT TAGCTCAATG
AACATCTTGC TTCCTGCAAG CGGTAAGGCT ATCACAGTCC CTTCACAAGA TATGGTTTTA
GGAATTTATT ACCTAAGCTT AGAGAGAAAT GACGAAAAAG GTGCAAATAA AATTTTCTCA
AGCGTCGATG AAGTAATGAT CGCTGAGGAG GCTAATACCC TTGGTCTTCA CGCTAAAATT
AAGACAATGG TTGATAATAA GATCATCTTT ACAACGGCTG GTCGCTTGAT CCTAAGAGCG
ATACTACCTG ATTTTGTCCC TGAAAATATG TGGAATAAGA TCATGAAGAA AAAAGACATT
GCAAATTTGG TTGATTATGT TTATAGAAAT GGCGGCCTTG AAGTAACGGC CGACTTCCTT
GATAAGCTTA AAAATTTAGG CTTTAGATAT GCTACAAAAG CGGGAATTTC TATCTCTATC
GCAGACATCA TCGTGCCAGA TAGCAAGCAA AAATATATCG ACGAAGCCAA GAAAAAAGTT
CGTGAAATTC AAAAGCAATA CGGTGCTGGT CTTTTAACAG ATAGTGAGAG ATATAACAAG
ATCATCGATA TCTGGACAGA TACAAATAAC AGCGTTGCAA GCGAGATGAT GAAGCTTATC
CAAAGCGATA AGGGTGGATT TAACTCAATT TATATGATGG CTGACTCAGG TGCGAGAGGT
AGTGCAGCGC AAATTCGCCA GCTAGCTGGT ATGCGTGGTC TTATGGCAAA ACCAGATGGC
TCGATCATCG AAACACCGAT CATTTCAAAC TTCCGTGAAG GTCTAAACAT AATGGAGTAC
TTCAACTCAA CCCACGGAGC TAGAAAAGGT CTTGCAGATA CCGCGCTAAA AACTGCCAAC
GCTGGTTACC TAACAAGAAA ACTAATCGAC GTTGCTCAAA ACGTTAAAGT GACAATGCAC
GATTGCGGTA CTCACGAGGG CGTTGAGATC ACAGATATCA CAGAGAGTGG CGAGCTAATA
GAGAGCCTTG AAGAGAGAGT ATTAGGGCGT GTTTTAGCAG ATGATGTGAT CGATCCTATA
ACAAATGAAA TTTTATTTAG CGAAGGCACT TTACTTGATG AAGAGAAAGC TAAGGCTATA
ACAGAAGCTG GCATAAAATC AGTAAGTATT AGAACACCTA TCACGTGCAA GGCGCCAAAA
GGCGTTTGCG CAAAATGCTA CGGATTAAAT TTGGGCGAGG GCAAACTTGT AAAACCAGGC
GAGGCTGTCG GTATCATCTC GGCTCAATCA ATCGGTGAGC CAGGTACTCA GCTAACGCTA
AGAACATTCC ACATTGGTGG TACGGCTTCT ACTGAGCAAC AAGACCGCCA AGTCATCGCT
CAAAAAGAGG GCTTTATTAG GTATTACAAC CTTAGTACAT ACGAGAACAA CGGCAAAAAG
ATCGTTGCAA ACAGAAGAAG TGCAGCTGTG CTACTTGTTG AGCCAAAGAT AAAATCAACA
ATTGATGGTA AAATCGAGAT CGAATATGCT CACGAAGACG TAAATATCGT TATCAAAGGC
AAAAAAGAAG AGATCAAATA TACTATCAGA AGAAACGACC TTGCTAAACC AAACGAACTA
GCTGGCGTTA GTGGTAAGAT CGAAGGCAAG ATGTATATCC CTTATGCAAA TGGCGACAAG
GTAAAAGAGA ATGAGAGTAT CGTCGAGATC ATAAAAGAGG GTTGGAATAT CCCAAATCGT
ATCCCTTATG CTAGTGAGCT TAAAATTTCA GATGGCGATC CAGTAACTAG AAAGATCACA
GCAGATGCAA ATGGTGTGGT TAAATTTTTC ATACTAAAAG GTGACTTCCT TGATAGACTA
AAAGATATCA AAAAAGGTCA CAAAGTAACT GAAAAAGGCT TCTTTGTTGT CGTCTCTGAC
AAGGACGGAC GTGAGGCAGT TCGCCACTAC ATCCCAAGAA ATTCTATCAT CCAAGTATCA
GATAATGATG CGGTAGAAAG AGCGACAGTG GTCTCACTAC CTGAAAAAGA TGACAAGCTA
ATAATCGCTG AGTGGGATCC ATACTCAACT CCAACTATCG CAGAAGAGGC TGGTGTGGTT
AGTTTTGAAG ATGTCGAGCC AGGATATAGT GCGACTGAGC AAGCTGACGA GGCAACTGGT
CAAAGACGTC TTGTTATCAA CGAGTATTTG CCAAGCGGCG TAAAACCAGC GATCATTATC
ACTACAAAGA GCGGACATTT GATAAAGTAT CCGCTTGATC CAAAAACTGC GATCTTTGTT
TCAAGTGGCG ACGAAGTGGC CCAAGCTGAC ATTTTGGCTA AGACTCCAAA AGCTGTTGCT
AAGTCAAAAG ACATTACCGG TGGTCTTCCA AGAGTTAGTG AGCTATTTGA AGCAAGACGC
CCTAAAAATA CAGCTATCGT TGCAGAGATC GATGGCGTTG TTAGATTTGA CAAGCCACTT
CGCTCAAAAG AGCGCATCAT CATCCAAGCA GAAGATGGCA CGACAGCTGA GTATTTGATC
GAGAAGAGCC GCCAGATCCA AGTAAGAGAC GGAGAATTTG TTCATGCTGG TGAGAAACTG
ACAGACGGAC TTATCTCAAG CCACGATATC TTAAGAATTC TTGGTGAAAA GGCGCTTCAC
TACTATTTGA TCAGTGAAAT TCAGCAAGTT TATCGCCGCC AAGGTGTTGC GATCGCTGAT
AAGCATATCG AGATCATCGT CTCTCAAATG CTTCGCCAAG TCAAAATCGT CGATAGTGGA
AATACAAATT TCATCGTTGG CGACATGGTT TCAAGAAACA AATTTAAAGA AGAGAATGAG
CGCATCATGA AAATGGGTGG CGAGCCAGCT ATTGCTGAAC CGATCCTTCT TGGTGTTACA
AGAGCGGCTA TCGGAAGTGA TAGTGTGATC TCTGCTGCAT CATTCCAAGA GACAACTAAG
GTCTTAACAG AAGCGTCAAT CGCTGCTAAA TTTGACTATC TTGAAGATCT AAAAGAGAAC
GTCATCCTTG GACGTATGAT CCCAGTTGGT ACTGGTTTTT ATAAAGATAA AAAGATAAAG
ATCAAAGAAA ACTAA
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| Protein sequence | MKLTNLKPVE IKEEHRPRDF EAFQLRLASP EKIKSWSYGE VKKPETINYR TLKPERDGLF
CAKIFGPIRD YECLCGKYKK MRYKGIKCEK CGVEVTTSKV RRSRMGHIEL VTPVAHIWYV
NFLPSRIGAL LGIKMKDLER VLYYEAYIVD NAGEAYYDNE NSKKVEKYDV LNEEQYQSLA
SRYEETGFTA RMGGEVIYDM LAELDLTQIL NQLKEEMEAT NSEAKKKTIV KRLKVIESFL
NSGNRPEWMM ITNLPVLPPD LRPLVNLDGG KFAVSDVNDL YRRVINRNSR LKRLLELDAP
EIIIRNEKRM LQEAVDALFD NGRRANAVKG ANKRPLKSLS EIIKGKQGRF RQNLLGKRVD
FSGRSVIVVG PKLKMDQCGL PKKMALELFK PHLLARLEEK GYATTVKQAK KMIEDKTNEV
WECLEEVVKD YPVMLNRAPT LHKLSIQAFH PVLVEGKAIQ LHPLVCAAFN ADFDGDQMAV
HVPLSQEAIA ECKILMLSSM NILLPASGKA ITVPSQDMVL GIYYLSLERN DEKGANKIFS
SVDEVMIAEE ANTLGLHAKI KTMVDNKIIF TTAGRLILRA ILPDFVPENM WNKIMKKKDI
ANLVDYVYRN GGLEVTADFL DKLKNLGFRY ATKAGISISI ADIIVPDSKQ KYIDEAKKKV
REIQKQYGAG LLTDSERYNK IIDIWTDTNN SVASEMMKLI QSDKGGFNSI YMMADSGARG
SAAQIRQLAG MRGLMAKPDG SIIETPIISN FREGLNIMEY FNSTHGARKG LADTALKTAN
AGYLTRKLID VAQNVKVTMH DCGTHEGVEI TDITESGELI ESLEERVLGR VLADDVIDPI
TNEILFSEGT LLDEEKAKAI TEAGIKSVSI RTPITCKAPK GVCAKCYGLN LGEGKLVKPG
EAVGIISAQS IGEPGTQLTL RTFHIGGTAS TEQQDRQVIA QKEGFIRYYN LSTYENNGKK
IVANRRSAAV LLVEPKIKST IDGKIEIEYA HEDVNIVIKG KKEEIKYTIR RNDLAKPNEL
AGVSGKIEGK MYIPYANGDK VKENESIVEI IKEGWNIPNR IPYASELKIS DGDPVTRKIT
ADANGVVKFF ILKGDFLDRL KDIKKGHKVT EKGFFVVVSD KDGREAVRHY IPRNSIIQVS
DNDAVERATV VSLPEKDDKL IIAEWDPYST PTIAEEAGVV SFEDVEPGYS ATEQADEATG
QRRLVINEYL PSGVKPAIII TTKSGHLIKY PLDPKTAIFV SSGDEVAQAD ILAKTPKAVA
KSKDITGGLP RVSELFEARR PKNTAIVAEI DGVVRFDKPL RSKERIIIQA EDGTTAEYLI
EKSRQIQVRD GEFVHAGEKL TDGLISSHDI LRILGEKALH YYLISEIQQV YRRQGVAIAD
KHIEIIVSQM LRQVKIVDSG NTNFIVGDMV SRNKFKEENE RIMKMGGEPA IAEPILLGVT
RAAIGSDSVI SAASFQETTK VLTEASIAAK FDYLEDLKEN VILGRMIPVG TGFYKDKKIK
IKEN
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