| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_4241 |
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| Symbol | fimD1 |
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| ID | 5587626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | - |
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| Start bp | 4229534 |
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| End bp | 4232053 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640927857 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_001465216 |
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| Protein GI | 157158761 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACCA GAATAGTGGT TGGCCTCACG GCAGGGACGT GTCTGATTTT CTCGCAAAAC
CTGATGGCCG AGGTCAGTGT ATTCAATCCG GCGCTTCTGG AAATCGACCA TCAATCCGGA
GTCGATATTC GCCAGTTTAA TCGGGCAAAC CTGATGCCCC CAGGTGTTTA TAGCGTTGAT
ATTTTTATCA ACGGTAAAAT GTTTGAACGT CAGGATGTGA CATTTGTTCA GGATAATCCA
GATGCTGATC TGCACGCATG CTTTATTGCC ATTAAAAAAA CACTGTCCTC CTTTGGCATA
AAAGTTGATG CGCTCAAATC GTTCAATGAT GTGGATGAGA CGGTTTGCCT CGATCCTGCT
CTACGTATTG AAGGCTCATC CTGGCAGTTT GACAGTGATA AATTGCAGCT GAATATATCC
ATTCCCCAAA TCTACATGGA CGCGATGGCT TATGATTACA TCAGCCCCAC GCGTTGGGAT
GAGGGGATTA ACGCGCTCAC CATCAACTAC GATTTTTCTG GTTCACATAC ACTACGTTCA
GATTATGGTT CACAAGAGAC AGATACCAGT TATCTCAATC TGCGCAATGG ACTGAATATT
GGACCGTGGC GGCTACGTAA TTACAGTACT TTAAACACCA GCGATGGCCG TGCGGAATAC
AACTCCATTA GTACCTGGAT ACAGCGCGAT ATTGCCGCGT TAAGAAGCCA GATTATGATT
GGTGATACGT GGACGGCGAG CGATATTTTC GACAGTACGC AAATTCGCGG CGCGCGTTTG
TATACTGATA ACGATATGCT ACCCGCCAGC CAGAATGGCT TTGCTCCTGT GGTTCGTGGG
ATTGCAAAGT CCAACGCCAC CGTCATCATT CGGCAGAATG GCTACGTGAT TTATCAGTCT
GCCGTTCCAC AAGGTGCTTT TGAGATCACC GATCTCAACA CCGCCAGTAC AGGTGGCGAT
TTGGACGTAA CCATCAAAGA AGAAGACGGT AGCGAACAAC GATTCACCCA ACCTTATGCT
TCATTGGCGA TTCTTAAACG TGAAGGTCAG ACAGATGTTG ATGTCAGCGT GGGTGAATTG
CGCGATGAAG ACGGATTTAC ACCGGACGTC CTTCAGGCGC AAATACTTCA TGGTTTTTCC
CACGGGATCA CTTTATATGG AGGTATGCAG GCTGCTGAAA ATTATGGTTC TGCAGCTCTG
GGTGTCGGTA AAGATCTTGG CGCTTTGGGC GCAATTTCTT TCGATGTGAC ACATGCTCGT
GCGAATTTTA GCCATGATGA TACAGAAACG GGTCAGTCAT ATCGCTTTCT CTATTCAAAA
CGATTTGACG ACACAGACAC TAGCTTGCGC CTGGTTGGCT ATCGTTACTC CACCGAGGGC
TACTATACCC TCAATGAGTG GGCATCGCGG CGCAACAGCC CTGAAGACTT TTGGGAAACA
GGTAACCGAC GTAGTCGCGT GGAGGGAACG CTAACGCAGT CGTTGGGGAG AGATTATGGC
AATTTATACC TGACATTAAG CCGGCAACAA TACTGGCATA CCGATGATGT CGAACGATTA
ATGCAATTTG GCTACAGCAG TAGCTGGAAG CGTCTCTCGT GGAACGTCTC CTGGAGTTAT
TCCAATACTG CCAGACAGGG GACGGGGAAC AACCATGCCA GTGATAACAC CAGTGAGCAG
ATCTACATGC TCTCTTTATC TGTTCCTTTA TCGGGCTGGT GGGGTAATAG TTACGCCACC
TATTCTGTTT CGCAAAACGA TAATTCCGGT AGCTCACATC AACTCGGACT CAGCGGTACG
GCGCTGGAAA GAAATAACCT TTCATGGAAT TTAATGCAGT CCTATAACAG TCATGATGAT
GAGGTTGGCG GTAATATGTC CCTGACCTAT GATGGCTCTT ATGGCACGGT GAACGGCAGC
TATAACTACA GCCAAAATTC CCAGAGGCTG AATTATGGTA TCAGAGGGGG AATTCTGGCA
CACAGCGAAG GGGTAACGTT AAGTCAGGAG TTAGGTGAAA CTATTGCTCT TGTTAAAGCA
CCTGGGGCCG CCGGGTTAGA AATAGATAAT ATGCGCGGTG CTGCGACGGA CTGGCGCGGC
TATACGGTCA AGACACAGCT AAACCCTTAT GATGAAAATC GGGTAGCAAT CAGCGATAAC
TATTTCTCGA AGTCGAATAT AGAACTTGAT AATACCGTCG TTACGATGGT TCCCACGCGT
GGTGCAGTGG TTAAAGCGGA GTTTGTGACT CATGTGGGTT ATCGCGTTCT CTTCAGAGTG
TTAAATGCAA ATGGTAAACC GGTACCTTTT GGAGCCATTG CTGCGATACA AGATGCAAGT
TTGGCAGATT CAGGAATTGT CGGTGACCGT GGCGAACTTT ATCTTTCTGG TCTACCAGAA
AAAGGACAGG TTACGTTATC CTGGGGAGAA AACGCCTCAA CAAAATGCAT CTTCAATTAT
TCACTTTCGA CACCAGAAAG TGAGAGCGGA TTAATTGAAC AGGGTGTGAC ATGTCATTAA
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| Protein sequence | MTTRIVVGLT AGTCLIFSQN LMAEVSVFNP ALLEIDHQSG VDIRQFNRAN LMPPGVYSVD
IFINGKMFER QDVTFVQDNP DADLHACFIA IKKTLSSFGI KVDALKSFND VDETVCLDPA
LRIEGSSWQF DSDKLQLNIS IPQIYMDAMA YDYISPTRWD EGINALTINY DFSGSHTLRS
DYGSQETDTS YLNLRNGLNI GPWRLRNYST LNTSDGRAEY NSISTWIQRD IAALRSQIMI
GDTWTASDIF DSTQIRGARL YTDNDMLPAS QNGFAPVVRG IAKSNATVII RQNGYVIYQS
AVPQGAFEIT DLNTASTGGD LDVTIKEEDG SEQRFTQPYA SLAILKREGQ TDVDVSVGEL
RDEDGFTPDV LQAQILHGFS HGITLYGGMQ AAENYGSAAL GVGKDLGALG AISFDVTHAR
ANFSHDDTET GQSYRFLYSK RFDDTDTSLR LVGYRYSTEG YYTLNEWASR RNSPEDFWET
GNRRSRVEGT LTQSLGRDYG NLYLTLSRQQ YWHTDDVERL MQFGYSSSWK RLSWNVSWSY
SNTARQGTGN NHASDNTSEQ IYMLSLSVPL SGWWGNSYAT YSVSQNDNSG SSHQLGLSGT
ALERNNLSWN LMQSYNSHDD EVGGNMSLTY DGSYGTVNGS YNYSQNSQRL NYGIRGGILA
HSEGVTLSQE LGETIALVKA PGAAGLEIDN MRGAATDWRG YTVKTQLNPY DENRVAISDN
YFSKSNIELD NTVVTMVPTR GAVVKAEFVT HVGYRVLFRV LNANGKPVPF GAIAAIQDAS
LADSGIVGDR GELYLSGLPE KGQVTLSWGE NASTKCIFNY SLSTPESESG LIEQGVTCH
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