| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_4133 |
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| Symbol | rfaQ |
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| ID | 5590050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | - |
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| Start bp | 4123005 |
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| End bp | 4124027 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640927752 |
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| Product | lipopolysaccharide core biosynthesis protein |
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| Protein accession | YP_001465112 |
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| Protein GI | 157157104 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02201] lipopolysaccharide heptosyltransferase III, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000187228 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTTC ATGGGGATAT GTTATTAACT ACTCCCGTCA TTAGTTCGCT GAAAAAAAAT
TACCCTGACG CAAAAATCGA TGTGCTGCTT TATCAGGACA CCATCCCGAT CCTGTCTGAA
AATCCAGAGA TTAACGCGCT CTACGGCATA AAAAATAAAA AAGCAAAAGC CTCAGAAAAA
ATTGCCAACT TTTTTCATCT CATCAAGGTA TTACGTGCCA ATAAGTATGA CCTTATCGTC
AATCTTACCG ATCAATGGAT GGTTGCTATA CTGGTTCGCT TATTAAATGC TCGTGTGAAA
ATTTCCCAGG ATTATCATCA TCGGCAGTCT GCTTTTTGGC GTAAAAGTTT CACCCATTTG
GTGCCGTTGC AGGGTGGAAA TGTGGTGGAA AGTAACTTAT CCGTGCTGAC ACCATTGGGA
CTTGATTCGT TGGTGAAGCA GACAACCATG AGTTACCCGC CTGCAAGCTG GAAACGTATG
CGTCGCGAAC TTGATCACGC TGGTGTTGGA CAAAATTATG TGGTTATCCA ACCTACGGCG
CGGCAAATCT TCAAATGCTG GGACAACGCC AAGTTTTCCG CTGTGATTGA TGCCTTACAT
GCTCGTGGTT ATGAAGTCGT TCTGACGTCC GGCCCAGATA AAGACGATCT GGCCTGCGTC
AATGAAATTG CGCAGGGATG CCAGACGCCA CCAGTAACGG CGCTGGCTGG AAAGGTGACC
TTCCCGGAAC TTGGTGCGTT AATCGATCAT GCGCAGCTGT TTATTGGCGT TGATTCCGCA
CCGGCGCATA TTGCCGCTGC AGTTAATACG CCGCTGATAT CGCTGTTTGG CGCAACAGAT
CATATTTTCT GGCGTCCCTG GTCAAATAAC ATGATTCAAT TCTGGGCGGG AGATTACCGG
GAAATGCCAA CGCGCGATCA GCGTGACCGA AATGAGATGT ATCTTTCGGT TATTCCGGCG
GCAGATGTCA TTGCTGCTGT CGATAAATTA CTGCCCTCCT CCACGACAGG TACGTCGTTA
TGA
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| Protein sequence | MRFHGDMLLT TPVISSLKKN YPDAKIDVLL YQDTIPILSE NPEINALYGI KNKKAKASEK
IANFFHLIKV LRANKYDLIV NLTDQWMVAI LVRLLNARVK ISQDYHHRQS AFWRKSFTHL
VPLQGGNVVE SNLSVLTPLG LDSLVKQTTM SYPPASWKRM RRELDHAGVG QNYVVIQPTA
RQIFKCWDNA KFSAVIDALH ARGYEVVLTS GPDKDDLACV NEIAQGCQTP PVTALAGKVT
FPELGALIDH AQLFIGVDSA PAHIAAAVNT PLISLFGATD HIFWRPWSNN MIQFWAGDYR
EMPTRDQRDR NEMYLSVIPA ADVIAAVDKL LPSSTTGTSL
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