Gene EcE24377A_3965 details

Gene Information

• Locus tag: EcE24377A_3965
• Symbol: nikR
• ID: 5588401
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009801
• Strand: +
• Start bp: 3936400
• End bp: 3936801
• Gene Length: 402 bp
• Protein Length: 133 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640927587
• Product: nickel responsive regulator
• Protein accession: YP_001464948
• Protein GI: 157158189
• COG category: [K] Transcription
• COG ID: [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
• TIGRFAM ID: [TIGR02793] nickel-responsive transcriptional regulator NikR

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACGAG TCACCATCAC GCTTGATGAC GATTTACTGG AGACGCTGGA CAGCCTGAGC 
CAGCGTCGTG GTTATAACAA CCGTTCCGAA GCTATCCGCG ATATTCTGCG TAGCGCCCTG 
GCCCAGGAGG CCACTCAGCA GCACGGCACG CAAGGTTTCG CGGTGCTCTC CTATGTGTAT 
GAACACGAAA AACGCGACTT AGCCAGCCGC ATTGTCTCCA CCCAGCACCA TCACCACGAT 
CTCTCCGTCG CCACGCTGCA TGTGCATATC AATCACGACG ACTGTCTGGA AATCGCCGTG 
CTGAAAGGTG ATATGGGCGA CGTGCAGCAT TTTGCCGATG ACGTTATCGC CCAGCGCGGC 
GTGCGGCACG GGCATTTGCA GTGCTTGCCG AAGGAAGATT GA 

 

Protein sequence

MQRVTITLDD DLLETLDSLS QRRGYNNRSE AIRDILRSAL AQEATQQHGT QGFAVLSYVY 
EHEKRDLASR IVSTQHHHHD LSVATLHVHI NHDDCLEIAV LKGDMGDVQH FADDVIAQRG 
VRHGHLQCLP KED