| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3899 |
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| Symbol | rtcR |
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| ID | 5586881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 3872933 |
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| End bp | 3874531 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640927520 |
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| Product | sigma-54 dependent transcriptional regulator RtcR |
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| Protein accession | YP_001464881 |
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| Protein GI | 157157321 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAAAA CAGTGGCTTT TGGCTTTGTC GGTACCGTGC TGGATTATGC CGGACGCGGC
AGTCAGCGCT GGTCGAAATG GCGTCCGACG CTTTGTTTAT GCCAGCAAGA ATCGTTAGTC
ATCGATCGGC TGGAATTGTT GCACGACACC CGCTCGCGCT CGCTATTCGA AACGCTTAAA
CGCGATATCG CCAGCGTTTC GCCAGAAACA GAAGTCGTGG GCGTTGAGAT TGAACTGCAT
AACCCGTGGG ATTTCGAAGA GGTTTACGCC TGCCTGCATG ATTTCGCCCG TGGTTACGAG
TTTCAGCCAG AAAAAGAAGA CTATTTAATT CACATCACCA CCGGCACCCA CGTCGCGCAG
ATTTGCTGGT TTCTGCTGGC GGAAGCGCGT TACCTGCCCG CCCGGCTGAT ACAATCTTCA
CCTCCGCGCA AAAAAGAACA GCCGCGCGGC GCAGGTGAAG TGACGATTAT CGATCTCGAT
TTAAGCCGTT ATAACGCCAT CGCCAGCCGC TTTGCCGAGG AACGCCAGCA AACGCTTGAT
TTTCTTAAGT CCGGCATTGC CACGCGTAAC CCCCACTTCA ACCGCATGAT TGAGCAGATC
GAAAAAGTGG CGATCAAATC CCGCGCGCCG ATTCTGCTTA ACGGTCCAAC CGGCGCGGGC
AAGTCATTTC TGGCGCGACG CATCTTCGAG TTAAAACAGG CGCGGCATCA GTTTAGCGGC
GCGTTTGTGG AAGTGAACTG CGCCACCCTG CGCGGCGATA CCGCCATGTC GACGCTGTTT
GGTCATGTAA AAGGCGCGTT TACCGGGGCG CGGGAATCTC GTGAAGGTTT ATTACGCAGC
GCCAACGGCG GAATGTTGTT TCTTGATGAG ATTGGCGAAC TGGGCGCAGA CGAACAAGCA
ATGCTGCTAA AAGCCATTGA AGAGAAAACC TTTTACCCGT TTGGCAGCGA TCGCCAGGTG
AGCAGTGATT TTCAGCTTAT CGCCGGAACG GTGCGCGATT TGCGCCAGCT GGTTGCCGAA
GGCAAATTTC GCGAAGATCT GTACGCGCGG ATCAATCTCT GGACCTTCAC CCTGCCGGGT
CTACGCCAGC GCCAGGAAGA TATTGAACCG AACCTTGATT ATGAAGTGGA GCGCCACGCC
ACACTCACTG GCGACAGCGT GCGTTTTAAC ACCGAAGCGC GGCGCGCCTG GTTGGCTTTT
GCGACCTCTC CCCAGGCAAC ATGGCGCGGT AACTTTCGCG AACTTTCTGC CAGCGTCACG
CGGATGGCCA CCTTTGCCAC TAGCGGACGC ATCACTCTGG ACGTGGTTGA AGATGAGATA
AACCGTCTGC GCTATAACTG GCAGGAGAGC CGCCCCTCCG CGCTTACGGC GTTGCTGGGC
GCAGAGGCAG AAAACATCGA CCTTTTTGAC AGGCTGCAAC TGGAACACGT GATAGCTCTC
TGTCGCCAGG CAAAGTCGCT TTCCGCTGCC GGACGCCTGC TTTTTGATGT TTCGCGCCAG
GGCAAAGCCA GCGTCAATGA CGCGGATCGG CTACGCAAAT ACCTGGCGCG TTTTGGTCTG
ACGTGGGAAG CCGTGCAGGA TCAGCACAGC TCCAGTTGA
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| Protein sequence | MRKTVAFGFV GTVLDYAGRG SQRWSKWRPT LCLCQQESLV IDRLELLHDT RSRSLFETLK
RDIASVSPET EVVGVEIELH NPWDFEEVYA CLHDFARGYE FQPEKEDYLI HITTGTHVAQ
ICWFLLAEAR YLPARLIQSS PPRKKEQPRG AGEVTIIDLD LSRYNAIASR FAEERQQTLD
FLKSGIATRN PHFNRMIEQI EKVAIKSRAP ILLNGPTGAG KSFLARRIFE LKQARHQFSG
AFVEVNCATL RGDTAMSTLF GHVKGAFTGA RESREGLLRS ANGGMLFLDE IGELGADEQA
MLLKAIEEKT FYPFGSDRQV SSDFQLIAGT VRDLRQLVAE GKFREDLYAR INLWTFTLPG
LRQRQEDIEP NLDYEVERHA TLTGDSVRFN TEARRAWLAF ATSPQATWRG NFRELSASVT
RMATFATSGR ITLDVVEDEI NRLRYNWQES RPSALTALLG AEAENIDLFD RLQLEHVIAL
CRQAKSLSAA GRLLFDVSRQ GKASVNDADR LRKYLARFGL TWEAVQDQHS SS
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