| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3881 |
|---|
| Symbol | yhgF |
|---|
| ID | 5589564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 3852134 |
|---|
| End bp | 3854455 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640927503 |
|---|
| Product | protein yhgF |
|---|
| Protein accession | YP_001464864 |
|---|
| Protein GI | 157157022 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATG ATTCGTTCTG CCGCATTATT GCGGGTGAAA TTCAGGCGCG CCCGGAACAG
GTTGACGCTG CCGTTCGCCT GCTTGACGAA GGGAATACCG TGCCGTTTAT CGCACGTTAT
CGTAAGGAAA TCACCGGCGG TCTGGATGAC ACGCAGCTGC GTAATCTGGA AACGCGTCTG
AGCTATCTGC GCGAGCTGGA AGAGAGACGT CAGGCGATCC TCAAATCCAT TTCCGAGCAA
GGCAAACTCA CCGATGATCT GGCGAAGGCC ATCAACGCCA CCCTAAGCAA AACCGAACTC
GAAGACCTCT ACCTGCCCTA CAAACCTAAA CGCCGCACCC GCGGGCAAAT CGCCATTGAA
GCAGGGCTTG AGCCGTTGGC TGACCTGCTG TGGAGCGATC CGTCACACAC GCCAGAAGTC
GCCGCTGCAC AATATGTTGA TGCCGATAAA GGCGTGGCAG ATACCAAAGC CGCGCTGGAT
GGCGCGCGCT ATATCCTGAT GGAACGGTTT GCCGAAGATG CCGCGCTGCT GGCGAAAGTG
CGTGATTATC TGTGGAAGAA CGCGCATCTG GTCTCAACCG TGGTGAGCGG TAAAGAAGAG
GAAGGGGCGA AATTCCGCGA CTATTTCGAT CATCACGAAC CGTTGTCCAC GGTGCCTTCT
CACCGCGCGC TGGCGATGTT CCGTGGGCGT AACGAAGGCG TACTCCAGCT TTCGCTGAAT
GCCGATCCGC AGTTCGATGA GCCGCCCAAA GAGAGCTATT GCGAGCAAAT CATCATGGAT
CACCTTGGCC TGCGCCTGAA CAATGCCCCG GCGGATAGCT GGCGCAAAGG CGTAGTGAGC
TGGACCTGGC GCATCAAGGT GCTGATGCAT CTGGAAACCG AACTGATGGG TACCGTGCGC
GAACGCGCGG AAGATGAAGC AATCAACGTC TTTGCCCGTA ACCTGCACGA TCTGCTGATG
GCGGCCCCTG CCGGACTGCG TGCAACGATG GGCCTCGATC CGGGTCTGCG TACCGGGGTA
AAAGTGGCGG TGGTCGATGC CACTGGCAAA CTGGTGGCGA CCGATACCAT TTACCCGCAC
ACCGGACAAG CCGCAAAAGC AGCGATGACC GTTGCTGCCT TGTGTGAAAA ACATAACGTT
GAACTGGTGG CGATCGGCAA CGGTACAGCT TCCCGCGAAA CTGAACGTTT CTATCTCGAC
GTGCAGAAGC AGTTCCCGAA AGTGACCGCA CAGAAAGTGA TCGTCAGCGA AGCTGGCGCG
TCGGTTTACT CAGCTTCCGA GCTGGCAGCG CAGGAGTTCC CGGATCTCGA CGTTTCGCTG
CGTGGTGCGG TATCTATCGC CCGCCGTTTG CAGGATCCGC TGGCGGAGCT GGTGAAAATC
GATCCGAAAT CTATCGGCGT AGGTCAGTAT CAGCATGACG TCAGCCAGAC GCAACTGGCC
CGCAAACTGG ATGCAGTAGT AGAAGACTGC GTAAACGCCG TTGGCGTCGA TCTCAACACC
GCTTCTGTTC CGCTATTAAC CCGCGTGGCG GGCCTGACGC GCATGATGGC GCAAAACATC
GTGGCCTGGC GCGATGAGAA CGGCCAGTTC AAGAACCGTC AGCAACTGCT GAAAGTCAGC
CGTCTGGGGC CGAAAGCCTT CGAGCAGTGC GCGGGCTTCC TGCGCATTAA CCACGGTGAT
AACCCGCTGG ACGCCTCTAC CGTTCACCCG GAAGCCTATC CGGTGGTGGA ACGCATTCTG
GCAGCAACAC AGCAGGCACT GAAAGATCTG ATGGGTAACA GCAGCGAACT GCGTAACCTG
AAAGCGTCTG ACTTTACTGA TGAAAAATTC GGTGTGCCGA CAGTAACTGA CATCATCAAA
GAGCTGGAAA AACCGGGTCG CGATCCGCGT CCGGAATTTA AAACCGCTCA GTTTGCCGAT
GGCGTCGAGA CAATGAACGA CCTGCAACCG GGTATGATCC TCGAAGGCGC TGTCACCAAC
GTCACCAACT TTGGCGCGTT TGTCGATATT GGCGTGCATC AGGACGGCCT GGTTCACATC
TCTTCATTGT CGAACAAGTT TGTGGAAGAT CCGCATACCG TGGTGAAAGC GGGCGACATT
GTGAAGGTGA AAGTGCTGGA AGTGGATCTT CAGCGTAAAC GTATCGCCCT GACCATGCGT
CTGGACGAGC AGCCTGGCGA AACCAACGCC CGTCGCGGCG GCGGTAATGA ACGCCCGCAA
AACAACCGCC CGGCAGCCAA ACCACGCGGT CGTGAAGCGC AGCCTGCCGG TAATAGCGCG
ATGATGGATG CGCTGGCGGC GGCAATGGGC AAAAAACGTT AA
|
|---|
| Protein sequence | MMNDSFCRII AGEIQARPEQ VDAAVRLLDE GNTVPFIARY RKEITGGLDD TQLRNLETRL
SYLRELEERR QAILKSISEQ GKLTDDLAKA INATLSKTEL EDLYLPYKPK RRTRGQIAIE
AGLEPLADLL WSDPSHTPEV AAAQYVDADK GVADTKAALD GARYILMERF AEDAALLAKV
RDYLWKNAHL VSTVVSGKEE EGAKFRDYFD HHEPLSTVPS HRALAMFRGR NEGVLQLSLN
ADPQFDEPPK ESYCEQIIMD HLGLRLNNAP ADSWRKGVVS WTWRIKVLMH LETELMGTVR
ERAEDEAINV FARNLHDLLM AAPAGLRATM GLDPGLRTGV KVAVVDATGK LVATDTIYPH
TGQAAKAAMT VAALCEKHNV ELVAIGNGTA SRETERFYLD VQKQFPKVTA QKVIVSEAGA
SVYSASELAA QEFPDLDVSL RGAVSIARRL QDPLAELVKI DPKSIGVGQY QHDVSQTQLA
RKLDAVVEDC VNAVGVDLNT ASVPLLTRVA GLTRMMAQNI VAWRDENGQF KNRQQLLKVS
RLGPKAFEQC AGFLRINHGD NPLDASTVHP EAYPVVERIL AATQQALKDL MGNSSELRNL
KASDFTDEKF GVPTVTDIIK ELEKPGRDPR PEFKTAQFAD GVETMNDLQP GMILEGAVTN
VTNFGAFVDI GVHQDGLVHI SSLSNKFVED PHTVVKAGDI VKVKVLEVDL QRKRIALTMR
LDEQPGETNA RRGGGNERPQ NNRPAAKPRG REAQPAGNSA MMDALAAAMG KKR
|
|---|
| |