| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3877 |
|---|
| Symbol | pckA |
|---|
| ID | 5587501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 3847567 |
|---|
| End bp | 3849189 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640927499 |
|---|
| Product | phosphoenolpyruvate carboxykinase |
|---|
| Protein accession | YP_001464860 |
|---|
| Protein GI | 157159150 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1866] Phosphoenolpyruvate carboxykinase (ATP) |
|---|
| TIGRFAM ID | [TIGR00224] phosphoenolpyruvate carboxykinase (ATP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTA ACAATGGTTT GACCCCGCAA GAACTCGAGG CTTATGGTAT CAGTGACGTA
CATGATATCG TTTACAACCC AAGCTACGAC CTGCTGTATC AGGAAGAGCT CGATCCGAGC
CTGACAGGTT ATGAGCGCGG GGTGTTAACT AATCTGGGTG CCGTTGCCGT CGATACCGGG
ATCTTCACCG GTCGTTCACC AAAAGATAAG TATATCGTCC GTGACGATAC CACTCGCGAT
ACTTTCTGGT GGGCAGACAA AGGCAAAGGT AAGAACGACA ACAAACCTCT CTCTCCGGAA
ACCTGGCAAC ATCTGAAAGG CCTGGTGACC AAACAGCTTT CCGGCAAACG TCTGTTCGTT
GTCGACGCCT TCTGTGGTGC GAACCCGGAT ACTCGTCTTT CCGTCCGTTT CATCACCGAA
GTGGCCTGGC AGGCGCATTT TGTCAAAAAC ATGTTTATTC GCCCGAGCGA TGAAGAGCTG
GCAGGTTTCA AACCAGACTT TATCGTTATG AACGGCGCGA AGTGCACTAA CCCGCAGTGG
AAAGAACAGG GTCTGAATTC CGAAAACTTC GTGGCGTTTA ACCTGACCGA GCGCATGCAG
CTGATTGGCG GCACCTGGTA CGGCGGCGAA ATGAAGAAAG GGATGTTCTC GATGATGAAC
TACCTGCTGC CGCTGAAAGG TATCGCTTCT ATGCACTGCT CCGCCAACGT TGGTGAGAAA
GGCGATGTTG CGGTGTTCTT CGGCCTTTCC GGCACTGGTA AAACCACCCT TTCCACCGAC
CCGAAACGCC GCCTGATTGG CGATGACGAA CACGGCTGGG ACGATGACGG TGTGTTTAAC
TTCGAAGGCG GCTGCTACGC AAAAACTATC AAGCTGTCGA AAGAAGCGGA ACCTGAAATC
TACAACGCTA TCCGTCGTGA TGCGTTGCTG GAAAACGTCA CCGTGCGTGA AGATGGCACT
ATCGACTTTG ATGATGGTTC AAAAACCGAG AACACCCGCG TTTCTTATCC GATCTATCAC
ATCGATAACA TCGTTAAGCC GGTTTCCAAA GCGGGCCACG CGACTAAGGT TATCTTCCTG
ACTGCTGATG CTTTCGGCGT GTTGCCGCCG GTTTCTCGCC TGACAGCCGA TCAAACCCAG
TATCACTTCC TCTCTGGCTT CACTGCCAAA CTGGCCGGTA CTGAGCGTGG CATCACCGAA
CCGACGCCAA CCTTCTCCGC TTGCTTCGGC GCGGCGTTCC TGTCGCTGCA CCCAACTCAG
TACGCAGAAG TGCTGGTAAA ACGTATGCAA GCGGCAGGTG CGCAGGCGTA TCTGGTTAAC
ACCGGCTGGA ACGGCACTGG AAAACGTATC TCGATTAAAG ATACCCGCGC TATTATCGAC
GCCATCCTCA ACGGTTCGCT GGATAACGCA GAAACTTTCA CTCTGCCGAT GTTTAACCTG
GCGATCCCAA CCGAACTGCC GGGCGTAGAC ACGAAGATTC TCGATCCGCG TAACACCTAC
GCTTCCCCGG AACAGTGGCA GGAAAAAGCC GAAACCCTGG CGAAACTGTT TATCGACAAC
TTTGATAAAT ACACCGACAC CCCTGCGGGT GCCGCGCTGG TAGCGGCTGG TCCGAAGCTG
TAA
|
|---|
| Protein sequence | MRVNNGLTPQ ELEAYGISDV HDIVYNPSYD LLYQEELDPS LTGYERGVLT NLGAVAVDTG
IFTGRSPKDK YIVRDDTTRD TFWWADKGKG KNDNKPLSPE TWQHLKGLVT KQLSGKRLFV
VDAFCGANPD TRLSVRFITE VAWQAHFVKN MFIRPSDEEL AGFKPDFIVM NGAKCTNPQW
KEQGLNSENF VAFNLTERMQ LIGGTWYGGE MKKGMFSMMN YLLPLKGIAS MHCSANVGEK
GDVAVFFGLS GTGKTTLSTD PKRRLIGDDE HGWDDDGVFN FEGGCYAKTI KLSKEAEPEI
YNAIRRDALL ENVTVREDGT IDFDDGSKTE NTRVSYPIYH IDNIVKPVSK AGHATKVIFL
TADAFGVLPP VSRLTADQTQ YHFLSGFTAK LAGTERGITE PTPTFSACFG AAFLSLHPTQ
YAEVLVKRMQ AAGAQAYLVN TGWNGTGKRI SIKDTRAIID AILNGSLDNA ETFTLPMFNL
AIPTELPGVD TKILDPRNTY ASPEQWQEKA ETLAKLFIDN FDKYTDTPAG AALVAAGPKL
|
|---|
| |