Gene EcE24377A_3690 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_3690 
SymbolrpoN 
ID5588468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009801 
Strand
Start bp3681874 
End bp3683307 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content53% 
IMG OID640927313 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001464680 
Protein GI157158873 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GTTTGCAACT CAGGCTTAGC CAACAACTGG CGATGACGCC ACAGCTCCAA 
CAGGCAATTC GTCTGTTGCA GTTGTCGACG CTGGAACTTC AGCAGGAGCT ACAGCAGGCG
CTGGAGAGTA ATCCGCTGCT TGAGCAAATC GACACTCATG AAGAAATCGA CACCCGCGAA
ACGCAAGACA GTGAAACGCT GGACACCGCC GACGCGCTCG AACAAAAAGA GATGCCGGAA
GAGCTGCCGC TCGATGCCAG TTGGGACACC ATTTACACCG CTGGTACACC ATCCGGCACC
AGCGGTGACT ACATTGACGA TGAGCTGCCG GTCTATCAGG GCGAAACGAC GCAGACCTTG
CAGGATTACC TGATGTGGCA GGTCGAGCTG ACACCGTTTT CCGACACTGA CCGCGCTATT
GCTACCTCTA TCGTCGATGC CGTTGATGAC ACCGGTTATC TGACTGTCCC GCTGGAAGAT
ATTCTCGAAA GTATGGGCGA TGAAGAGATC GACATCGACG AGGTTGAAGC CGTCCTTAAG
CGGATCCAAC GGTTTGATCC GGTCGGTGTA GCGGCAAAAG ATCTGCGTGA CTGCCTGCTA
ATCCAACTCT CCCAATTCGA TAAAACCACG CCGTGGCTGG AAGAGGCCAG ATTGATCATT
AGCGATCATC TCGATCTGTT AGCCAATCAC GACTTCCGCA CTTTAATGCG CGTCACGCGT
CTGAAAGAAG ATGTGCTGAA AGAAGCCGTC AATCTGATCC AGTCGCTCGA TCCGCGCCCC
GGGCAGTCGA TCCAGACTGG CGAACCTGAG TATGTCATTC CAGATGTGCT GGTGCGTAAG
CATAACGGTC ACTGGACAGT AGAACTCAAC AGTGACAGCA TTCCGCGTCT GCAAATCAAC
CAGCACTACG CCTCGATGTG CAATAACGCT CGCAATGATG GTGACAGCCA GTTTATCCGC
AGCAATCTGC AGGATGCCAA ATGGTTGATC AAGAGTCTGG AAAGCCGTAA CGATACGCTA
CTGCGCGTGA GTCGCTGTAT CGTTGAACAG CAGCAAGCCT TCTTTGAGCA AGGCGAAGAA
TATATGAAAC CGATGGTACT GGCCGATATC GCCCAGGCTG TCGAAATGCA TGAATCGACG
ATATCTCGCG TGACCACGCA AAAATACCTG CATAGTCCAC GAGGCATTTT TGAACTGAAG
TATTTCTTTT CCAGTCACGT CAATACCGAG GGCGGCGGCG AAGCTTCCTC CACGGCGATT
CGTGCGCTGG TGAAGAAATT AATCGCGGCG GAAAACCCAG CGAAACCGTT GAGCGACAGC
AAGTTAACCT CTTTGCTGTC GGAACAAGGT ATCATGGTGG CACGCCGCAC TGTTGCGAAG
TACCGAGAGT CTTTATCCAT TCCGCCGTCA AACCAGCGTA AACAGCTCGT TTGA
 
Protein sequence
MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQELQQA LESNPLLEQI DTHEEIDTRE 
TQDSETLDTA DALEQKEMPE ELPLDASWDT IYTAGTPSGT SGDYIDDELP VYQGETTQTL
QDYLMWQVEL TPFSDTDRAI ATSIVDAVDD TGYLTVPLED ILESMGDEEI DIDEVEAVLK
RIQRFDPVGV AAKDLRDCLL IQLSQFDKTT PWLEEARLII SDHLDLLANH DFRTLMRVTR
LKEDVLKEAV NLIQSLDPRP GQSIQTGEPE YVIPDVLVRK HNGHWTVELN SDSIPRLQIN
QHYASMCNNA RNDGDSQFIR SNLQDAKWLI KSLESRNDTL LRVSRCIVEQ QQAFFEQGEE
YMKPMVLADI AQAVEMHEST ISRVTTQKYL HSPRGIFELK YFFSSHVNTE GGGEASSTAI
RALVKKLIAA ENPAKPLSDS KLTSLLSEQG IMVARRTVAK YRESLSIPPS NQRKQLV