Gene EcE24377A_3620 details

Gene Information

• Locus tag: EcE24377A_3620
• Symbol: agaB
• ID: 5588353
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009801
• Strand: +
• Start bp: 3621351
• End bp: 3621827
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640927244
• Product: PTS system N-acetylgalactosamine-specific transporter subunit IIB
• Protein accession: YP_001464613
• Protein GI: 157157032
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
• TIGRFAM ID: [TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGTC CAAATATTCT CTTAACCCGT ATTGATAACC GTCTGGTTCA CGGTCAGGTT 
GGCGTGACCT GGACATCCAC CATCGGTGCG AATCTGCTGG TAGTCGTGGA TGATGTTGTC 
GCTAACGATG ATATTCAACA GAAATTAATG GGTATTACCG CAGAAACCTA CGGCTTTGGC 
ATTCGTTTCT TTACTATCGA AAAAACCATT AACGTCATCG GCAAAGCTGC ACCGCATCAG 
AAGATCTTCC TGATTTGCCG TACGCCACAA ACGGTACGTA AATTGGTAGA AGGTGGCATT 
GACCTGAAAG ATATCAACGT CGGCAATATG CATTTCTCGG AAGGGAAAAA GCAAATCAGC 
AGTAAAGTTT ATGTCGATGA CCAGGATCTC GCGGACTTAC GTTTTATTAA ACAACGTGGC 
GTGAATGTTT TCATTCAGGA CGTCCCTGGC GATCAAAAAG AACAAATCCC TGACTAA 

 

Protein sequence

MSSPNILLTR IDNRLVHGQV GVTWTSTIGA NLLVVVDDVV ANDDIQQKLM GITAETYGFG 
IRFFTIEKTI NVIGKAAPHQ KIFLICRTPQ TVRKLVEGGI DLKDINVGNM HFSEGKKQIS 
SKVYVDDQDL ADLRFIKQRG VNVFIQDVPG DQKEQIPD