Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_3428 |
Symbol | gspC |
ID | 5590427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 3436927 |
End bp | 3437886 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640927055 |
Product | putative type II secretion protein GspC |
Protein accession | YP_001464425 |
Protein GI | 157156659 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3031] Type II secretory pathway, component PulC |
TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCGCGGG TTGTTTTTCG TGACGCACGA ATTTATCTCA TTCAATGGCT GACAAAAATT CGTCACACTC TTAACCAGAG ACAATCTTTT AATACAGACA AAGAGCATCT GCGAAAAATT GTACGCGGGA TGTTCTGGCT GATGCTGCTT ATTATTTCTG CAAAAGTGGC GCATTCACTC TGGCGCTATT TCTCCTTTTC TGCGGAATAT ACGGCTGTTT CCCCATCGGC GAATAAACCG CCCCGTGCGG ATGCAAAAAC GTTCGATAAA AATGACGTGC AATTAATCAG CCAGCAAAAC TGGTTTGGCA AATATCAGCC CGTCGCCACG CCGGTAAAAC AACCCGAACC TGTGCCTGTG GCAGAAACGC GTCTTAATGT GGTGCTGCGC GGGATTGCCT TTGGTGCCAG ACCCGGCGCG GTTATTGAAG AAGGCGGTAA ACAGCAGGTC TATTTGCAGG GTGAAACGCT TGGCTCGCAC AATGCGGTGA TTGAGGAAAT CAATCGCGAC CATGTGATGC TGCGCTATCA GGGAAAAATA GAGCGCCTGA GCCTGGCAGA AGAGGGGCAT TCCACCGTAG CCGTGACCAA CAAAAAAGCT GTCAGTGACG AAGCAAAGCA AGCTGTTGCT GAACCTGCTG TCAGTGCGCC AGTGGAGATC CCGACTGCCG TGCGTCAGGC ACTGGCGAAA GATCCGCAGA AAATTTTTAA CTATATCCAG CTTACGCCTG TGCGTAAGGA GGGAATTGTC GGTTATGCAG TGAAGCCGGG GGCAGATCGT TCTCTGTTCG ATGCCAGCGG TTTCAAGGAA GGCGATATCG CCATTGCGCT AAATCAGCAG GATTTCACTG ATCCACGAGC AATGATTGCT CTGATGCGGC AGTTACCTTC AATGGATTCC ATTCAACTTA CGGTTTTACG CAAGGGTGCG CGCCACGACA TTTCCATCGC GCTGCGCTAA
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Protein sequence | MARVVFRDAR IYLIQWLTKI RHTLNQRQSF NTDKEHLRKI VRGMFWLMLL IISAKVAHSL WRYFSFSAEY TAVSPSANKP PRADAKTFDK NDVQLISQQN WFGKYQPVAT PVKQPEPVPV AETRLNVVLR GIAFGARPGA VIEEGGKQQV YLQGETLGSH NAVIEEINRD HVMLRYQGKI ERLSLAEEGH STVAVTNKKA VSDEAKQAVA EPAVSAPVEI PTAVRQALAK DPQKIFNYIQ LTPVRKEGIV GYAVKPGADR SLFDASGFKE GDIAIALNQQ DFTDPRAMIA LMRQLPSMDS IQLTVLRKGA RHDISIALR
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