| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3427 |
|---|
| Symbol | gspD |
|---|
| ID | 5588088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 3434837 |
|---|
| End bp | 3436897 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640927054 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001464424 |
|---|
| Protein GI | 157157281 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTTGGC GTGATATTAC GTTGTCGGTC TGGCGTAAGA AGACAACTGG CCTCAAAACA
AAAAAGCGTT TACTGCCGCT GGTGCTGGCA GCGGCATTAT GCAGTTCACC GGTTTGGGCG
GAAGAAGCCA CTTTCACCGC TAATTTTAAA GATACCGACC TGAAATCGTT CATCGAAACC
GTCGGCGCTA ACCTTAATAA AACCATCATT ATGGGGCCGG GCGTACAGGG GAAAGTGAGT
ATTCGCACCA TGACCCCGCT CAATGAACGC CAGTATTACC AGCTATTCCT TAACCTGCTG
GAAGCACAGG GGTATGCCGT CGTACCGATG GAAAACGACG TGCTGAAGGT GGTGAAATCC
AGCGCTGCGA AAGTCGAGCC GCTGCCGCTG GTCGGTGAAG GCAGCGACAA CTACGCGGGC
GATGAAATGG TCACCAAAGT AGTGCCGGTA CGTAATGTGT CGGTACGCGA GTTGGCACCG
ATTCTGCGCC AGATGATCGA CAGCGCAGGC TCAGGCAACG TTGTTAATTA CGATCCCTCC
AACGTGATTA TGCTCACCGG ACGCGCCTCC GTTGTGGAGC GCCTGACAGA AGTGATCCAG
CGCGTGGATC ACGCGGGTAA TCGCACCGAA GAGGTGATCC CGCTGGATAA CGCCTCGGCT
TCGGAAATCG CCCGCGTGCT GGAAAGCCTG ACGAAAAACA GCGGCGAGAA CCAGCCAGCG
ACGCTGAAAT CTCAAATTGT CGCCGACGAA CGCACCAACA GTGTGATTGT CAGTGGTGAC
CCGGCCACGC GGGACAAAAT GCGCCGCCTG ATCCGTCGGC TGGACTCAGA AATGGAACGC
AGCGGCAACA GCCAGGTTTT CTATCTCAAA TACAGCAAAG CCGAAGATCT GGTCGATGTG
CTGAAGCAGG TCAGCGGCAC GCTCACGGCG GCTAAAGAAG AGGCGGAAGG CACGGTCGGT
AGCGGGCGTG AGATTGTATC CATCGCCGCC AGCAAACACA GTAATGCCCT GATTGTAACC
GCACCGCAGG ACATCATGCA GTCGCTGCAA AGCGTGATTG AACAACTGGA TATTCGCCGT
GCTCAGGTGC ACGTCGAGGC GTTGATCGTG GAAGTTGCCG AAGGTAGCAA TATCAACTTC
GGCGTGCAGT GGGCGTCGAA AGATGCCGGA TTAATGCAGT TTGCTAATGG TACGCAGATC
CCTATCGGTA CGCTGGGGGC AGCCATTTCT CAGGCGAAAC CGCAGAAAGG CTCGACGGTG
ATCAGTGAAA ACGGCGCTAC CACCATTAAT CCGGATACCA ACGGCGATCT CTCCACGCTC
GCCCAGCTTC TTTCCGGCTT TAGCGGTACG GCGGTTGGTG TGGTGAAAGG CGACTGGATG
GCGCTGGTGC AGGCGGTTAA AAACGACTCC AGCTCGAACG TGCTCTCCAC GCCGAGCATC
ACCACGCTGG ACAACCAGGA AGCCTTCTTC ATGGTGGGCC AGGACGTTCC GGTATTAACC
GGCTCTACCG TTGGCTCCAA TAACAGCAAT CCTTTCAATA CAGTAGAAAG GAAAAAAGTC
GGCATCATGC TGAAAGTCAC GCCGCAGATT AACGAAGGTA ACGCGGTACA GATGGTGATT
GAGCAGGAAG TCTCGAAGGT GGAAGGACAG ACCAGCCTCG ACGTGGTGTT TGGTGAGCGC
AAACTGAAAA CCACCGTGCT GGCTAACGAT GGTGAGCTGA TTGTGCTTGG TGGTCTGATG
GACGATCAGG CGGGAGAAAG CGTGGCGAAA GTGCCGCTGC TGGGCGATAT CCCATTGATT
GGTAACCTGT TTAAATCGAC GGCGGATAAA AAAGAAAAAC GTAACCTGAT GGTGTTTATC
CGCCCGACCA TTCTGCGTGA CGGTATGGCG GCAGACGGCG TGTCGCAGCG CAAATATAAC
TATATGCGCG CCGAACAGAT CTATCGTGAT GAGCAAGGTT TAAGCCTGAT GCCGCACACC
GCACAGCCGG TACTGCCAGC GCAAAACCAG GCCTTACCGC CGGAAGTTCG CGCGTTCCTC
AATGCCGGGA GAACGCGTTA A
|
|---|
| Protein sequence | MFWRDITLSV WRKKTTGLKT KKRLLPLVLA AALCSSPVWA EEATFTANFK DTDLKSFIET
VGANLNKTII MGPGVQGKVS IRTMTPLNER QYYQLFLNLL EAQGYAVVPM ENDVLKVVKS
SAAKVEPLPL VGEGSDNYAG DEMVTKVVPV RNVSVRELAP ILRQMIDSAG SGNVVNYDPS
NVIMLTGRAS VVERLTEVIQ RVDHAGNRTE EVIPLDNASA SEIARVLESL TKNSGENQPA
TLKSQIVADE RTNSVIVSGD PATRDKMRRL IRRLDSEMER SGNSQVFYLK YSKAEDLVDV
LKQVSGTLTA AKEEAEGTVG SGREIVSIAA SKHSNALIVT APQDIMQSLQ SVIEQLDIRR
AQVHVEALIV EVAEGSNINF GVQWASKDAG LMQFANGTQI PIGTLGAAIS QAKPQKGSTV
ISENGATTIN PDTNGDLSTL AQLLSGFSGT AVGVVKGDWM ALVQAVKNDS SSNVLSTPSI
TTLDNQEAFF MVGQDVPVLT GSTVGSNNSN PFNTVERKKV GIMLKVTPQI NEGNAVQMVI
EQEVSKVEGQ TSLDVVFGER KLKTTVLAND GELIVLGGLM DDQAGESVAK VPLLGDIPLI
GNLFKSTADK KEKRNLMVFI RPTILRDGMA ADGVSQRKYN YMRAEQIYRD EQGLSLMPHT
AQPVLPAQNQ ALPPEVRAFL NAGRTR
|
|---|
| |