Gene EcE24377A_3281 details

Gene Information

• Locus tag: EcE24377A_3281
• Symbol: speA
• ID: 5590224
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009801
• Strand: -
• Start bp: 3299058
• End bp: 3301034
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640926918
• Product: arginine decarboxylase
• Protein accession: YP_001464290
• Protein GI: 157155489
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGACG ACATGTCTAT GGGTTTGCCT TCGTCAGCGG GCGAACACGG TGTACTACGC 
TCCATGCAGG AGGTTGCAAT GAGCTCCCAG GAAGCCAGCA AGATGCTGCG TACTTACAAT 
ATTGCCTGGT GGGGCAATAA CTACTATGAC GTTAACGAGC TGGGCCACAT CAGCGTGTGC 
CCGGACCCGG ACGTCCCGGA AGCTCGCGTC GATCTCGCGC AGTTAGTGAA AACTCGTGAA 
GCACAGGGCC AGCGTCTGCC TGCACTGTTC TGTTTCCCAC AGATCCTGCA GCATCGTTTG 
CGTTCCATTA ACGCCGCGTT CAAACGTGCG CGGGAATCCT ACGGCTATAA CGGCGATTAC 
TTCCTTGTTT ATCCGATCAA AGTTAACCAG CACCGTCGCG TGATTGAGTC CCTGATTCAT 
TCGGGCGAAC CGCTGGGTCT GGAAGCCGGT TCCAAAGCCG AGTTGATGGC GGTGCTGGCA 
CATGCTGGCA TGACCCGTAG CGTCATCGTC TGCAACGGTT ATAAAGACCG CGAATATATC 
CGCCTGGCAT TAATTGGCGA GAAGATGGGG CACAAGGTCT ATCTGGTCAT TGAGAAGATG 
TCAGAAATCG CCATTGTGCT GGATGAAGCA GAACGTCTGA ATGTCGTTCC TCGTCTGGGC 
GTGCGTGCAC GTCTGGCTTC GCAGGGCTCG GGTAAATGGC AGTCCTCCGG CGGGGAAAAA 
TCGAAGTTCG GCCTGGCTGC GACTCAGGTA CTGCAACTGG TTGAAACCCT GCGTGAAGCC 
GGGCGTCTCG ACAGCCTGCA ACTACTGCAC TTCCACCTCG GTTCGCAGAT GGCGAATATT 
CGCGATATCG CCACGGGCGT TCGTGAATCG GCGCGTTTCT ATGTGGAACT GCACAAGCTG 
GGCGTCAATA TTCAGTGCTT CGACGTCGGC GGCGGTCTGG GCGTGGATTA TGAAGGTACT 
CGTTCGCAGT CCGACTGTTC GGTGAACTAC GGCCTCAATG AATATGCCAA CAACATCATC 
TGGGCGATTG GTGATGCATG TGAAGAAAAC GGTCTGCCAC ATCCGACGGT AATCACTGAA 
TCGGGTCGTG CAGTGACTGC GCATCACACC GTGCTGGTGT CTAATATCAT CGGCGTGGAA 
CGTAACGAAT ACACGGTGCC GACCGCGCCT GCAGAAGATG CGCCGCGTGC GCTGCAAAGC 
ATGTGGGAAA CCTGGCAGGA GATGCACGAA CCGGGAACTC GCCGTTCTCT GCGTGAATGG 
TTACACGACA GTCAGATGGA TCTGCACGAC ATTCATATCG GCTACTCTTC CGGCACCTTT 
AGCCTGCAAG AACGCGCATG GGCTGAGCAG CTTTATTTGA GCATGTGCCA TGAAGTGCAG 
AAGCAGCTGG ATCCGCAAAA CCGTGCTCAT CGTCCGATAA TCGACGAACT GCAGGAACGT 
ATGGCGGACA AAATGTACGT CAATTTCTCG CTGTTCCAGT CAATGCCGGA CGCATGGGGG 
ATCGACCAGT TGTTCCCGGT TCTGCCGCTG GAAGGGCTGG ATCAAGTGCC GGAACGTCGC 
GCTGTGCTGC TGGATATTAC CTGTGACTCT GACGGTGCTA TCGACCACTA TATTGATGGT 
GACGGTATTG CCACGACAAT GCCTATGCCG GAGTACGATC CAGAGAATCC GCCGATGCTC 
GGTTTCTTTA TGGTCGGCGC ATATCAGGAG ATCCTCGGCA ACATGCACAA CCTGTTCGGT 
GATACCGAAG CGGTTGACGT GTTCGTGTTC CCTGACGGTA GTGTCGAAGT GGAACTGTCT 
GACGAAGGCG ATACCGTGGC GGACATGCTG CAATATGTAC AGCTCGATCC GAAAACGCTG 
TTAACTCAGT TCCGTGATCA AGTGAAGAAA ACCGATCTTG ATGCTGAACT GCAACAACAG 
TTCCTTGAAG AGTTCGAGGC AGGTTTGTAC GGTTATACCT ATCTTGAAGA TGAATAA 

 

Protein sequence

MSDDMSMGLP SSAGEHGVLR SMQEVAMSSQ EASKMLRTYN IAWWGNNYYD VNELGHISVC 
PDPDVPEARV DLAQLVKTRE AQGQRLPALF CFPQILQHRL RSINAAFKRA RESYGYNGDY 
FLVYPIKVNQ HRRVIESLIH SGEPLGLEAG SKAELMAVLA HAGMTRSVIV CNGYKDREYI 
RLALIGEKMG HKVYLVIEKM SEIAIVLDEA ERLNVVPRLG VRARLASQGS GKWQSSGGEK 
SKFGLAATQV LQLVETLREA GRLDSLQLLH FHLGSQMANI RDIATGVRES ARFYVELHKL 
GVNIQCFDVG GGLGVDYEGT RSQSDCSVNY GLNEYANNII WAIGDACEEN GLPHPTVITE 
SGRAVTAHHT VLVSNIIGVE RNEYTVPTAP AEDAPRALQS MWETWQEMHE PGTRRSLREW 
LHDSQMDLHD IHIGYSSGTF SLQERAWAEQ LYLSMCHEVQ KQLDPQNRAH RPIIDELQER 
MADKMYVNFS LFQSMPDAWG IDQLFPVLPL EGLDQVPERR AVLLDITCDS DGAIDHYIDG 
DGIATTMPMP EYDPENPPML GFFMVGAYQE ILGNMHNLFG DTEAVDVFVF PDGSVEVELS 
DEGDTVADML QYVQLDPKTL LTQFRDQVKK TDLDAELQQQ FLEEFEAGLY GYTYLEDE