| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3116 |
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| Symbol | csdA |
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| ID | 5587381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 3123414 |
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| End bp | 3124619 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640926758 |
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| Product | cysteine sulfinate desulfinase |
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| Protein accession | YP_001464134 |
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| Protein GI | 157156888 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000009707 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTTT TTAATCCCGC GCAGTTTCGC GCCCAGTTTC CCGCACTACT GGATGCGGGC
GTCTATCTCG ATAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACTCGA
CAGTTTTACA GCCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC
CTGACCGCGC GTTATGAAGC TGCACGAGAG AAAGTGGCGC AATTACTGAA TGCACCGGAT
GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC
TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAGATTATTG TCAGCGTGGC AGAACACCAC
GCCAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACTG GAGCCAAAGT GGTGAAATTG
CCGCTTAATG CGCAGCGACT GCCGGATGTC GATTTGTTGC CAGAACTGAT TACTCCCCGT
AGTCGGATTC TAGCGTTGGG TCAGATGTCG AACGTTACTG GCGGTTGCCC GGATCTGGCG
CGAGCGATTA CCTTTGCTCA TTCAGCCGGG ATGGTGGTGA TGGTTGATGG TGCTCAGGGG
GCAGTGCATT TCCCCGCGGA TGTTCAGCAA CTGGATATTG ATTTCTATGC TTTTTCAGGT
CACAAACTGT ATGGCCCGAC AGGTATCGGC GTGCTGTATG GTAAATCAGA ACTGCTGGAA
GCGATGTCGC CCTGGCTGGG TGGCGGCAAA ATGATTCACG AAGTGAGTTT TGACGGTTTC
ACCACTCAAT CTGCGCCGTG GAAACTGGAA GCAGGAACGC CAAATGTCGC TGGCGTCATA
GGATTAAGCG CGGCGCTGGA ATGGCTGGCA GATTACGATA TCAACCAGGC CGAAAGCTGG
AGCCGTAGCT TAGCAACGCT TGCAGAAGAA GCGCTGGCGA AACGTCCAGG CTTTCGTTCA
TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGCGTTCA TCATAGCGAT
ATGGTGACGC TGCTGGCGGA GTACGGTATT GCCTTGCGGG CCGGGCAACA TTGCGCTCAG
CCGCTACTGG CAGAATTAGG CGTAACCGGC ACACTGCGCG CCTCATTTGC GCCATATAAT
ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG
GATTAA
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| Protein sequence | MNVFNPAQFR AQFPALLDAG VYLDSAATAL KPEAVVEATR QFYSLSAGNV HRSQFAEAQR
LTARYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH
ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALGQMS NVTGGCPDLA
RAITFAHSAG MVVMVDGAQG AVHFPADVQQ LDIDFYAFSG HKLYGPTGIG VLYGKSELLE
AMSPWLGGGK MIHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLA DYDINQAESW
SRSLATLAEE ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
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