| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_2880 |
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| Symbol | rluD |
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| ID | 5588757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | - |
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| Start bp | 2884658 |
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| End bp | 2885638 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640926532 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_001463915 |
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| Protein GI | 157156608 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0196126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC GAGTACAGCT CACTGCAACG GTGTCCGAAA ACCAACTCGG TCAACGCTTA
GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGAATAAA AGAATGGATC
CTCGACCAGC GCGTGCTGGT AAACGGCAAA GTTTGTGATA AGCCGAAAGA AAAAGTATTG
GGTGGCGAGC AGGTTGCCAT CAATGCTGAG ATTGAAGAAG AAGCGCGTTT TGAACCGCAG
GATATCCCGC TGGATATCGT CTATGAAGAT GAAGATATCA TCGTCATTAA TAAACCGCGC
GACCTGGTGG TACATCCTGG CGCGGGTAAC CCGGATGGCA CGGTACTGAA TGCGTTGCTT
CATTACTATC CGCCCATTGC CGATGTACCA CGTGCGGGCA TCGTCCATCG TCTGGATAAA
GACACCACTG GCCTGATGGT TGTGGCAAAA ACCGTTCCGG CTCAGACGCG TTTAGTCGAA
TCTTTGCAAC GGCGTGAAAT TACTCGTGAG TATGAAGCGG TGGCGATTGG TCATATGACC
GCTGGCGGTA CAGTAGATGA ACCCATCAGC CGCCACCCGA CCAAACGTAC TCACATGGCG
GTGCATCCGA TGGGCAAACC GGCGGTGACT CACTATCGCA TCATGGAACA CTTCCGTGTG
CACACGCGTC TGCGGTTGCG TCTGGAAACT GGACGTACGC ACCAGATCCG CGTGCATATG
GCCCATATCA CTCATCCGCT GGTGGGCGAT CCGGTTTATG GTGGCCGTCC GCGTCCGCCA
AAAGGTGCTT CGGAAGCATT TATCTCCATG CTGCGTAAGT TTGACCGCCA GGCGCTTCAT
GCAACCATGC TGCGTCTTTA TCACCCGATC TCCGGCATCG AAATGGAATG GCATGCGCCT
ATTCCACAAG ATATGGTGGA GCTGATTGAG GTGATGCGCG CCGATTTCGA AGAGCATAAG
GATGAAGTGG ACTGGTTATG A
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| Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK VCDKPKEKVL
GGEQVAINAE IEEEARFEPQ DIPLDIVYED EDIIVINKPR DLVVHPGAGN PDGTVLNALL
HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT
AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM
AHITHPLVGD PVYGGRPRPP KGASEAFISM LRKFDRQALH ATMLRLYHPI SGIEMEWHAP
IPQDMVELIE VMRADFEEHK DEVDWL
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