| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_2368 |
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| Symbol | mdtC |
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| ID | 5587177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 2341022 |
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| End bp | 2344099 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640926033 |
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| Product | multidrug efflux system subunit MdtC |
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| Protein accession | YP_001463428 |
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| Protein GI | 157157887 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTTTT TTGCCCTCTT CATTTACCGC CCGGTGGCGA CGATTTTACT GTCGGTCGCC
ATTACCCTGT GCGGCATACT GGGCTTCCGT ATGCTGCCGG TCGCCCCGCT GCCGCAGGTC
GATTTTCCGG TGATTATGGT CAGCGCCTCG CTGCCCGGTG CGTCACCAGA AACAATGGCG
TCTTCCGTTG CCACGCCGCT GGAGCGCTCA CTTGGGCGCA TTGCCGGAGT CAGTGAAATG
ACCTCCAGCA GTTCGCTCGG CAGCACGCGT ATTATTTTGC AGTTTGATTT TGACCGGGAT
ATCAACGGCG CGGCGCGCGA TGTGCAGGCG GCGATCAACG CTGCACAAAG TTTGCTGCCC
AGCGGGATGC CCAGCCGTCC GACCTATCGC AAAGCTAACC CGTCGGATGC GCCAATTATG
ATCCTCACGC TGACATCCGA TACTTATTCG CAGGGTGAAC TGTACGATTT TGCCTCGACG
CAGCTGGCTC CGACGATTTC GCAAATCGAC GGTGTCGGTG ATGTCGATGT TGGCGGCAGC
TCGCTGCCCG CCGTACGCGT CGGGCTGAAT CCGCAGGCGC TGTTTAATCA GGGCGTCTCG
CTGGACGACG TACGCACCGC CATCAGCAAT GCCAACGTGC GTAAACCGCA GGGGGCGCTG
GAAGATGGCA CTCACCGCTG GCAGATCCAG ACCAATGATG AGCTAAAAAC CGCCGCCGAA
TATCAGCCGT TGATTATTCA TTACAACAAC GGCGGCGCGG TTCGTCTGGG CGATGTGGCG
ACGGTGACCG ACTCGGTGCA GGATGTGCGC AACGCCGGGA TGACCAACGC CAAACCGGCT
ATTTTGCTGA TGATCCGCAA GCTGCCGGAA GCCAATATTA TCCAGACGGT AGACAGCATC
CGGGCAAAAT TACCGGAGTT GCAGGAAACC ATTCCGGCGG CGATTGATCT GCAAATTGCT
CAGGATCGCT CCCCCACCAT TCGCGCCTCG CTGGAAGAAG TCGAGCAAAC GCTGATTATC
TCGGTGGCGC TGGTGATTCT GGTGGTGTTT TTATTCCTGC GCTCGGGTCG CGCCACTATT
ATTCCCGCCG TTGCGGTGCC GGTTTCGCTG ATTGGTACGT TTGCGGCGAT GTACCTGTGC
GGATTCAGTC TCAATAACCT TTCGTTAATG GCGCTCACCA TCGCTACTGG TTTCGTGGTG
GATGACGCCA TCGTGGTGCT GGAAAACATT GCCCGTCATC TGGAAGCGGG GATGAAACCG
CTACAGGCCG CGCTACAAGG TACTCGCGAA GTCGGCTTTA CGGTGCTGTC GATGAGTCTG
TCACTGGTGG CGGTGTTCCT GCCGCTGCTG TTGATGGGCG GATTGCCGGG CCGACTGTTA
CGCGAATTTG CCGTGACGCT TTCTGTCGCC ATTGTTATAT CGTTGCTGGT TTCTCTGACA
TTAACGCCAA TGATGTGTGG CTGGATGCTG AAAGCCAGCA AGCCGCGTGA GCAAAAGCGA
CTGCGTGGTT TTGGCCGCAT GTTGGTAGCC CTGCAACAAG GCTACGGCAA GTCGCTGAAA
TGGGTGCTCA ATCATACCCG TCTGGTGGGT GTGGTGCTGC TTGGCACCAT TGCGCTGAAT
ATCTGGCTGT ATATCTCGAT CCCGAAAACC TTCTTCCCGG AGCAGGACAC CGGCGTGCTG
ATGGGCGGGA TACAGGCGGA TCAGAGCATT TCGTTTCAGG CGATGCGCGG CAAATTGCAG
GATTTCATGA AAATTATCCG TGACGATCCG GCAGTGGATA ATGTCACCGG CTTTACCGGC
GGTTCACGAG TTAACAGTGG GATGATGTTT ATCACCCTCA AGCCACGCGA CGAACGCAGC
GAAACGGCGC AGCAAATTAT CGACCGTCTG CGCGTAAAAC TGGCGAAAGA ACCGGGGGCG
AATCTGTTCC TGATGGCGGT ACAGGATATT CGCGTTGGTG GGCGTCAGTC GAACGCCAGC
TACCAGTACA CGTTGTTATC CGACGACCTG GCGGCACTGC GCGAATGGGA GCCGAAAATC
CGCAAAAAAC TGGCGACGTT GCCGGAACTG GCGGACGTGA ACTCCGATCA GCAGGATAAC
GGCGCGGAGA TGAATCTGGT TTACGACCGT GACACCATGG CACGGCTGGG AATCGACGTA
CAAGCCGCCA ACAGTCTGTT AAATAACGCC TTCGGTCAGC GGCAAATCTC GACCATTTAC
CAGCCGATGA ACCAGTATAA AGTGGTGATG GAAGTGGATC CGCGCTATAC CCAGGACATC
AGTGCGCTGG AAAAAATGTT CGTTATCAAT AACGAAGGCA AAGCGATCCC GCTGTCGTAT
TTCGCTAAAT GGCAACCGGC GAATGCCCCA CTATCGGTGA ATCATCAGGG ATTATCGGCG
GCCTCGACCA TTTCGTTTAA CCTGCCGACC GGAAAATCGC TCTCGGACGC CAGTGCGGCG
ATCGATCGCG CAATGACCCA GCTTGGGGTG CCTTCGACGG TGCGCGGCAG TTTTGCCGGC
ACGGCGCAGG TGTTCCAGGA GACGATGAAC TCGCAGGTGA TCCTGATTAT CGCCGCCATC
GCCACGGTGT ATATCGTGCT GGGTATCCTT TACGAGAGTT ACGTACATCC GCTGACGATT
CTCTCCACCC TGCCCTCGGC GGGCGTTGGA GCGCTGTTGG CGCTGGAGCT GTTCAATGCC
CCGTTCAGCC TAATCGCCCT GATAGGGATC ATGCTATTAA TCGGCATCGT GAAGAAAAAC
GCCATTATGA TGGTCGATTT TGCGCTTGAA GCCCAACGGC ACGGTAACCT GACGCCGCAG
GAAGCTATTT TCCAGGCCTG TCTGCTGCGT TTTCGCCCGA TTATGATGAC TACCCTGGCG
GCGCTGTTTG GTGCGCTGCC GCTGGTATTG TCAGGCGGCG ACGGCTCGGA GCTGCGGCAA
CCCCTGGGGA TCACCATTGT CGGCGGACTG GTAATGAGCC AGCTCCTTAC GCTGTATACC
ACGCCGGTGG TGTATCTCTT TTTCGACCGT CTGCGGCTGC GTTTTTCGCG TAAACCTAAA
CAAACGGTAA CCGAGTAA
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| Protein sequence | MKFFALFIYR PVATILLSVA ITLCGILGFR MLPVAPLPQV DFPVIMVSAS LPGASPETMA
SSVATPLERS LGRIAGVSEM TSSSSLGSTR IILQFDFDRD INGAARDVQA AINAAQSLLP
SGMPSRPTYR KANPSDAPIM ILTLTSDTYS QGELYDFAST QLAPTISQID GVGDVDVGGS
SLPAVRVGLN PQALFNQGVS LDDVRTAISN ANVRKPQGAL EDGTHRWQIQ TNDELKTAAE
YQPLIIHYNN GGAVRLGDVA TVTDSVQDVR NAGMTNAKPA ILLMIRKLPE ANIIQTVDSI
RAKLPELQET IPAAIDLQIA QDRSPTIRAS LEEVEQTLII SVALVILVVF LFLRSGRATI
IPAVAVPVSL IGTFAAMYLC GFSLNNLSLM ALTIATGFVV DDAIVVLENI ARHLEAGMKP
LQAALQGTRE VGFTVLSMSL SLVAVFLPLL LMGGLPGRLL REFAVTLSVA IVISLLVSLT
LTPMMCGWML KASKPREQKR LRGFGRMLVA LQQGYGKSLK WVLNHTRLVG VVLLGTIALN
IWLYISIPKT FFPEQDTGVL MGGIQADQSI SFQAMRGKLQ DFMKIIRDDP AVDNVTGFTG
GSRVNSGMMF ITLKPRDERS ETAQQIIDRL RVKLAKEPGA NLFLMAVQDI RVGGRQSNAS
YQYTLLSDDL AALREWEPKI RKKLATLPEL ADVNSDQQDN GAEMNLVYDR DTMARLGIDV
QAANSLLNNA FGQRQISTIY QPMNQYKVVM EVDPRYTQDI SALEKMFVIN NEGKAIPLSY
FAKWQPANAP LSVNHQGLSA ASTISFNLPT GKSLSDASAA IDRAMTQLGV PSTVRGSFAG
TAQVFQETMN SQVILIIAAI ATVYIVLGIL YESYVHPLTI LSTLPSAGVG ALLALELFNA
PFSLIALIGI MLLIGIVKKN AIMMVDFALE AQRHGNLTPQ EAIFQACLLR FRPIMMTTLA
ALFGALPLVL SGGDGSELRQ PLGITIVGGL VMSQLLTLYT TPVVYLFFDR LRLRFSRKPK
QTVTE
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