| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_1803 |
|---|
| Symbol | ynfM |
|---|
| ID | 5589626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 1795707 |
|---|
| End bp | 1796960 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640925479 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | YP_001462884 |
|---|
| Protein GI | 157159248 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCGTA CTACAACTGT TGATGGCGCT CCGGCAAGCG ACACTGACAA GCAAAGCATT
TCTCAGCCAA ATCAATTTAT TAAACGCGGT ACGCCGCAAT TTATGCGCGT CACCCTGGCG
CTGTTCTCTG CCGGACTGGC AACCTTCGCA CTTCTCTATT GTGTGCAACC TATCCTTCCG
GTGCTTTCGC AGGAGTTTGG CTTAACGCCC GCGAACAGTA GTATTTCACT GTCCATTTCC
ACGGCGATGT TGGCTATTGG TTTGCTGTTT ACTGGCCCCC TATCCGATGC CATTGGTCGC
AAACCAGTGA TGGTCACGGC GCTACTGTTG GCCTCCATTT GTACGTTACT TTCGACAATG
ATGACCAGCT GGCACGGCAT TTTGATTATG CGCGCCTTGA TTGGGCTTTC GTTAAGTGGC
GTGGCAGCTG TTGGCATGAC TTATCTTAGC GAGGAAATCC ACCCCAGTTT CGTGGCCTTT
TCGATGGGGT TGTATATCAG CGGCAACTCA ATTGGCGGCA TGAGCGGGCG CTTAATTAGT
GGTGTCTTCA CGGACTTTTT CAACTGGCGA ATTGCTCTGG CGGCAATCGG TTGTTTCGCG
CTAGCCTCGG CGTTGATGTT CTGGAAAATC CTCCCTGAAT CACGCCATTT TCGCCCGACT
TCGCTGCGAC CTAAGACGTT GTTTATCAAC TTTCGTCTGC ACTGGCGTGA CCGGGGATTA
CCGTTATTGT TCGCAGAAGG CTTTTTGCTG ATGGGGTCGT TCGTCACGCT GTTTAATTAC
ATCGGCTATC GGTTGATGCT TTCCCCCTGG CATGTCAGTC AGGCCGTGGT TGGCTTATTA
TCGCTGGCTT ATTTGACCGG TACATGGAGC TCACCCAAAG CCGGAACCAT GACCACCCGC
TACGGGCGCG GTCCGGTGAT GTTGTTTTCG ACGGGGGTTA TGCTGTTTGG TTTACTGATG
ACCTTATTCA GCTCGCTGTG GCTGATCTTT GCCGGAATGT TACTCTTCTC AGCAGGATTC
TTCGCAGCCC ACTCAGTTGC CAGCAGCTGG ATTGGCCCCC GCGCAAAACG CGCTAAAGGC
CAGGCCTCCT CGCTGTATCT GTTCAGTTAC TATCTGGGGT CGAGTATTGC CGGGACGCTG
GGTGGTGTTT TCTGGCATAA CTATGGCTGG AACGGCGTCG GCGCATTTAT TGCTCTGATG
CTGGTCATTG CTCTGCTGGT CGGGACGCGT TTGCATCGTC GTCTGCACGC CTGA
|
|---|
| Protein sequence | MSRTTTVDGA PASDTDKQSI SQPNQFIKRG TPQFMRVTLA LFSAGLATFA LLYCVQPILP
VLSQEFGLTP ANSSISLSIS TAMLAIGLLF TGPLSDAIGR KPVMVTALLL ASICTLLSTM
MTSWHGILIM RALIGLSLSG VAAVGMTYLS EEIHPSFVAF SMGLYISGNS IGGMSGRLIS
GVFTDFFNWR IALAAIGCFA LASALMFWKI LPESRHFRPT SLRPKTLFIN FRLHWRDRGL
PLLFAEGFLL MGSFVTLFNY IGYRLMLSPW HVSQAVVGLL SLAYLTGTWS SPKAGTMTTR
YGRGPVMLFS TGVMLFGLLM TLFSSLWLIF AGMLLFSAGF FAAHSVASSW IGPRAKRAKG
QASSLYLFSY YLGSSIAGTL GGVFWHNYGW NGVGAFIALM LVIALLVGTR LHRRLHA
|
|---|
| |