Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1794 |
Symbol | ynfE |
ID | 5586527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 1784076 |
End bp | 1786502 |
Gene Length | 2427 bp |
Protein Length | 808 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640925470 |
Product | anaerobic dimethyl sulfoxide reductase, A subunit YnfE |
Protein accession | YP_001462875 |
Protein GI | 157158793 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases [TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAAAA ATGACCGAAT GGTGGGCATC AGCCGCAGAA CACTCGTTAA ATCAACCGCG ATAGGTTCTC TGGCGCTGGC TGCAGGCGGT TTTTCTTTAC CGTTCACCCT GCGCAGTGCA GCGGCAGCGG TACAACAGGC CAGCGAAAAA GTGATCTGGG GTGCCTGTTC CGTCAACTGT GGTAGCCGCT GTGCACTTCG TCTACATGTT AAAGATAATG AAGTCACCTG GGTGGAAACT GACAACACCG GCAGCGACGA GTATGGCAAT CATCAAGTAC GCGCCTGTTT GCGTGGTCGA TCCATCCGCC GGCGTATTAA TCATCCCGAT CGCTTGAATT ACCCAATGAA ACGCGTGGGT ACACGCGGTG AAGGCAAATT CGAACGGATT AGCTGGGATG AAGCCCTGGA TACTATCGCC AGTAGCCTGA AAAAAACCGT CGAACAATAT GGCAATGAGG CTGTATATAT TCAGTACTCT TCGGGGATTG TTGGCGGCAA TATGACCCGC TCTTCGCCAT CAGCCTCGGC GGTCAAACGC CTGATGAACT GCTACGGCGG TTCACTCAAT CAGTATGGCT CCTACAGCAC CGCGCAAATT TCCTGTGCCA TGCCCTACAC CTACGGCAGT AATGATGGCA ACAGCACCAC GGATATTGAA AACAGCAAGC TGGTCGTGAT GTTTGGTAAC AACCCGGCAG AAACCCGCAT GAGCGGCGGT GGCATCACTT ATCTTCTTGA AAAAGCGCGC GAGAAATCGA ACGCCAAAAT GATTGTTATC GATCCGCGAT ATACCGATAC GGCTGCTGGT CGTGAAGATG AATGGCTCCC TATTCGCCCG GGCACCGATG CCGCGCTGGT TGCGGGTATT GCCTGGGTAT TGATTAACGA AAATCTCGTT GATCAACCTT TTCTCGATAA ATACTGCGTC GGCTATGACG AAAAAACCTT ACCCGCAGAT GCACCCAAAA ATGGTCACTA TAAAGCCTAT ATTCTTGGTG AAGGTGATGA TAACACAGCG AAAACGCCGC AGTGGGCTTC GCAAATTACC GGTATCCCGG TAGACCGTAT CATCAAACTG GCGCGTGAAA TTGGCACAGC AAAACCCGCT TATATCTGCC AGGGCTGGGG GCCGCAACGC CAGGCAAACG GCGAACTGAC TGCACGCGCT ATTGCTATGT TACCTATTTT GACGGGCAAT GTCGGCATCA GCGGCGGAAA TAGTGGCGCG CGTGAATCGA CCTATACCAT TACCATAGAA CGCCTGCCGG TGCTGGATAA TCCGGTCAAA ACGTCAATCT CCTGCTTCAG CTGGACAGAT GCTATCGATC ATGGTCCGCA AATGACGGCA ATCCGCGACG GCGTCCGCGG CAAAGATAAA CTGGATGTGC CCATTAAGTT CATCTGGAAC TACGCGGGAA ATACCCTCGT TAATCAGCAT TCTGACATCA ACAAAACGCA TGAAATTCTG CAGGACGAAT CGAAATGCGA AATGATTGTG ATCATCGAAA ACTTTATGAC CTCATCGGCA AAATATGCCG ACATTCTGCT GCCAGACCTG ATGACCGTTG AGCAGGAAGA TATTATTCCT AACGACTACG CCGGTAACAT GGGATATCTC ATTTTCCTCC AGCCTGTCAC CAGCGAAAAA TTCGAACGCA AACCGATTTA CTGGATCCTG AGTGAAGTCG CGAAACGTCT TGGACCTGAC GTCTATCAAA AGTTCACAGA AGGTCGCACG CAGGAACAAT GGTTACAACA TCTGTACGCC AAAATGCTTG CCAAAGATCC GGCGTTACCG TCTTACGACG AACTGAAAAA AATGGGTATC TATAAGCGTA AAGATCCCAA TGGCCATTTT GTCGCCTACA AAGCATTTCG TGACGACCCC GAGGCAAATC CACTTAAAAC GCCTTCCGGT AAGATTGAAA TTTATTCCAG CAGGCTGGCG GAAATTGCCC GTACCTGGGA ACTGGAAAAA GATGAAGTGA TAAGCCCATT GCCAGTTTAT GCCTCAACCT TTGAAGGCTG GAACTCCCCT GAACGTAGAA CCTTCCCACT GCAACTGTTT GGTTTCCATT ACAAATCCCG TACTCACTCG ACCTACGGCA ATATTGATCT CCTGAAGGCT GCCTGCCGTC AGGAGGTGTG GATCAACCCT ATAGATGCGC AGAAACGTGG GATTGCCAAC GGCGATATGG TGCGGGTGTT TAACCATCGT GGCGAAGTTC GGCTACCAGC CAAAGTAACA CCACGTATTC TCCCTGGAGT TAGCGCTATG GGCCAGGGAG CCTGGCACGA GGCCAATATG TCTGGCGATA AAATCGACCA TGGCGGCTGT GTGAATACGC TAACCACTCT GCGCCCTTCA CCACTGGCGA AGGGAAACCC GCAGCACACT AATCTGGTCG AGATCGAAAA AATATAA
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Protein sequence | MSKNDRMVGI SRRTLVKSTA IGSLALAAGG FSLPFTLRSA AAAVQQASEK VIWGACSVNC GSRCALRLHV KDNEVTWVET DNTGSDEYGN HQVRACLRGR SIRRRINHPD RLNYPMKRVG TRGEGKFERI SWDEALDTIA SSLKKTVEQY GNEAVYIQYS SGIVGGNMTR SSPSASAVKR LMNCYGGSLN QYGSYSTAQI SCAMPYTYGS NDGNSTTDIE NSKLVVMFGN NPAETRMSGG GITYLLEKAR EKSNAKMIVI DPRYTDTAAG REDEWLPIRP GTDAALVAGI AWVLINENLV DQPFLDKYCV GYDEKTLPAD APKNGHYKAY ILGEGDDNTA KTPQWASQIT GIPVDRIIKL AREIGTAKPA YICQGWGPQR QANGELTARA IAMLPILTGN VGISGGNSGA RESTYTITIE RLPVLDNPVK TSISCFSWTD AIDHGPQMTA IRDGVRGKDK LDVPIKFIWN YAGNTLVNQH SDINKTHEIL QDESKCEMIV IIENFMTSSA KYADILLPDL MTVEQEDIIP NDYAGNMGYL IFLQPVTSEK FERKPIYWIL SEVAKRLGPD VYQKFTEGRT QEQWLQHLYA KMLAKDPALP SYDELKKMGI YKRKDPNGHF VAYKAFRDDP EANPLKTPSG KIEIYSSRLA EIARTWELEK DEVISPLPVY ASTFEGWNSP ERRTFPLQLF GFHYKSRTHS TYGNIDLLKA ACRQEVWINP IDAQKRGIAN GDMVRVFNHR GEVRLPAKVT PRILPGVSAM GQGAWHEANM SGDKIDHGGC VNTLTTLRPS PLAKGNPQHT NLVEIEKI
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