Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1716 |
Symbol | lsrB |
ID | 5586185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 1719018 |
End bp | 1720040 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640925397 |
Product | autoinducer-2 ABC transporter, periplasmic autoinducer-2-binding protein LsrB |
Protein accession | YP_001462802 |
Protein GI | 157156137 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTTC ATCGCTTTAA GAAAATCGCC TTACTTAGCG CTCTTGGCAT TGCCGCAATC TCTATGAATG TGCAGGCCGC AGAGCGTATT GCATTTATTC CCAAACTGGT TGGCGTGGGA TTTTTTACCA GCGGTGGCAA CGGCGCACAA CAAGCGGGTA AAGAGCTGAG CGTTGATGTG ACCTACGACG GGCCGACAGA ACCCAGTGTT TCTGGTCAGG TACAGTTGAT TAATAACTTC GTCAATCAAG GTTATAACGC CATTATCGTT TCTGCGGTTT CGCCTGATGG CTTGTGTCCG GCACTGAAAC GCGCCATGCA ACGTGGTGTG AGAGTGCTGA CCTGGGACTC TGATACTAAA CCGGAGTGCC GCTCTTACTA CATTAATCAG GGAACGCCCG CCCAGTTGGG AGGTATGTTG GTGGATATGG CGGCGCGTCA GGTGAATAAA GACAAAGCCA AAGTCGCGTT TTTCTACTCA AGCCCCACCG TTACGGACCA AAACCAGTGG GTGAAAGAAG CGAAAGCGAA AATCGCCAAA GAGCATCCTG GCTGGGAAAT TGTCACTACG CAGTTTGGCT ATAACGATGC CACTAAATCA TTACAAACCG CAGAAGGAAT ATTAAAAGCG TATAGCGATC TCGACGCCAT TATCGCCCCC GACGCCAACG CCCTGCCCGC TGCCGCACAA GCCGCAGAAA ACCTGAAAAA TGACAAAGTT GCGATTGTCG GATTCAGTAC GCCAAACGTG ATGCGTCCAT ATGTGGAACG CGGCACGGTG AAAGAATTTG GCCTGTGGGA TGTGGTTCAG CAAGGCAAAA TTTCAGTGTA TGTCGCGGAT GCATTATTGA AAAAAGGATC AATGAAAACG GGCGACAAGC TGGATATCCA GGGCGTAGGT CAGGTTGAAG TCTCGCCAAA CAGCGTTCAG GGCTATGACT ACGAAGCGGA TGGTAATGGC ATCGTACTGT TACCGGAGCG CGTGATATTC AACAAAGAGA ATATCGGCAA ATACGATTTC TGA
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Protein sequence | MTLHRFKKIA LLSALGIAAI SMNVQAAERI AFIPKLVGVG FFTSGGNGAQ QAGKELSVDV TYDGPTEPSV SGQVQLINNF VNQGYNAIIV SAVSPDGLCP ALKRAMQRGV RVLTWDSDTK PECRSYYINQ GTPAQLGGML VDMAARQVNK DKAKVAFFYS SPTVTDQNQW VKEAKAKIAK EHPGWEIVTT QFGYNDATKS LQTAEGILKA YSDLDAIIAP DANALPAAAQ AAENLKNDKV AIVGFSTPNV MRPYVERGTV KEFGLWDVVQ QGKISVYVAD ALLKKGSMKT GDKLDIQGVG QVEVSPNSVQ GYDYEADGNG IVLLPERVIF NKENIGKYDF
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