| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_1489 |
|---|
| Symbol | |
|---|
| ID | 5589676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 1476484 |
|---|
| End bp | 1478469 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640925181 |
|---|
| Product | RNase II stability modulator |
|---|
| Protein accession | YP_001462586 |
|---|
| Protein GI | 157155383 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0536587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG TTAGGGAGTC CACAACGTTG TACAACTTTC TCGGATCGCA CAATCCATAC
TGGCGGTTGA CGGAAAGCAG CGATGTTTTG CGCTTTTCTA CCACTGAAAC CACAGAACCT
GATCGTACTT TGCAGTTATC TGCCGAACAG GCTGCTCGCA TCAGGGAAAT GACGGTCATC
ACCTCCAGCC TGATGATGAG TCTGACCGTC GATGAGAGCG ATCTTTCTGT GCATCTGGTA
GGACGAAAAA TCAATAAACG GGAATGGGCT GGCAACGCGT CTGCATGGCA TGACACACCG
GCGGTTGCTC GTGATTTATC ACACGGGCTT TCCTTTGCTG AGCAGGTAGT TTCTGAAGCA
CATTCCGCAA TAGTCATTCT CGACAGCCGG GGGAATATTC AACGCTTCAA TCGGTTATGT
GAAGATTACA CAGGGTTGAA AGAACACGAC GTCATTGGGC AAAGCGTGTT TAAACTGTTT
ATGAGCCGTC GTGAAGCTGC GGCATCCAGG CGCAATAACC GTGTATTTTT TCGAAGCGGC
AATGCATATG AAGTCGAACT GTGGATACCA ACATGTAAAG GCCAGCGGCT GTTTCTGTTT
CGCAATAAAT TTGTCCACAG CGGCAGTGGC AAAAACGAGA TTTTTTTAAT CTGTTCCGGC
ACCGACATTA CCGAAGAGCG CCGCGCTCAG GAGCGACTGC GTATTCTGGC AAATACCGAC
AGTATCACCG GACTGCCGAA TCGTAACGCA ATGCAGGATT TAATCGATCA CGCTATTAAT
CATGCAGATA ACAATAAAGT TGGGGTTGTG TATCTTGATT TGGATAATTT CAAAAAGGTC
AACGACGCCT ATGGGCATTT GTTTGGTGAC CAGTTATTAC GCGACGTGTC ATTGGCTATT
TTAAGCTGTC TCGAACATGA CCAGGTGTTG GCGCGTCCAG GTGGGGATGA GTTTCTGGTA
CTGGCATCCA ACACCTCACA AAGCGCGCTG GAAGCAATGG CATCACGAAT TTTGACCCGC
TTACGGCTCC CCTTTCGCAT TGGTTTAATT GAAGTTTATA CCAGCTGTTC AGTAGGTATT
GCACTCTCTC CCGAACATGG TTCAGACAGC ACGGCTATTA TTCGTCACGC CGACACAGCA
ATGTACACAG CGAAGGAAGG CGGACGAGGA CAATTTTGCG TTTTTACCCC AGAAATGAAT
CAACGGGTAT TTGAATATCT CTGGCTGGAT ACCAACTTGC GTAAAGCACT GGAAAACGAT
CAGTTGGTTA TTCACTATCA ACCGAAAATC ACCTGGCGTG GCGAAGTGCG CAGTCTGGAA
GCACTAGTAC GTTGGCAGTC ACCTGAACGT GGGTTGATTC CACCGTTGGA CTTCATTTCC
TACGCCGAAG AGTCAGGGCT AATTGTGCCT TTAGGCCGTT GGGTGATTCT CGATGTCGTA
CGCCAGGTGG CAAAGTGGCG GGATAAAGGC ATAAACCTGC GAGTGGCGGT AAATATTTCT
GCACGTCAGC TCGCCGATCA AACCATTTTC ACCGCCCTGA AACAGGTTCT CCAGGAACTC
AATTTTGAAT ACTGCCCTAT AGATGTTGAA CTGACAGAGA GTTGTCTGAT TGAGAATGAT
GAACTGGCAC TGTCTGTTAT TCAACAATTT AGCCAACTAG GTGCGCAAGT GCATCTGGAT
GATTTTGGTA CCGGCTACTC TTCACTTTCG CAACTGGCGC GCTTTCCGAT CGATGCCATC
AAACTTGACC AGGTTTTTGT TCGAGATATT CACAAACAAC CTGTCTCGCA GTCACTGGTC
CGGGCGATCG TCGCTGTGGC CCAGGCATTG AATCTTCAGG TGATCGCCGA AGGTGTAGAG
AGTGCAAAGG AAGATGCTTT TTTAACCAAG AACGGGATCA ATGAGCGGCA AGGATTTTTG
TTTGCCAAAC CGATGCCCGC CGTCGCCTTC GAACGCTGGT ATAAACGCTA TCTGAAGCGC
GCATAA
|
|---|
| Protein sequence | MKTVRESTTL YNFLGSHNPY WRLTESSDVL RFSTTETTEP DRTLQLSAEQ AARIREMTVI
TSSLMMSLTV DESDLSVHLV GRKINKREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA
HSAIVILDSR GNIQRFNRLC EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG
NAYEVELWIP TCKGQRLFLF RNKFVHSGSG KNEIFLICSG TDITEERRAQ ERLRILANTD
SITGLPNRNA MQDLIDHAIN HADNNKVGVV YLDLDNFKKV NDAYGHLFGD QLLRDVSLAI
LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI EVYTSCSVGI
ALSPEHGSDS TAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND
QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV
RQVAKWRDKG INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND
ELALSVIQQF SQLGAQVHLD DFGTGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV
RAIVAVAQAL NLQVIAEGVE SAKEDAFLTK NGINERQGFL FAKPMPAVAF ERWYKRYLKR
A
|
|---|
| |