Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_0709 |
Symbol | oprD |
ID | 5586646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 731443 |
End bp | 732849 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640924425 |
Product | porin D |
Protein accession | YP_001461845 |
Protein GI | 157158347 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000316757 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTACGT TTAGTGGCAA ACGTAGTACG CTGGCGCTGG CTATCGCCGG TGTTACAGCA ATGTCGGGCT TTATGGCAAT GCCGGAGGCT CGCGCCGAAG GATTCATCGA CGATTCAACC TTAACCGGCG GTATATATTA CTGGCAGCGT GAACGCGACC GTAAAGATGT TACCGACGGC GACAAATACA AAACCAATCT TTCTCACTCC ACCTGGAATG CCAACCTCGA TTTTCAGTCC GGTTATGCTG CTGATATGTT CGGCCTTGAT ATTGCTGCGT TTACGGCGAT TGAAATGGCG GAAAACGGCG ACAGCTCCCA CCCGAACGAA ATCGCGTTTT CAAAAAGTAA TAAAGCCTAT GACGAAGACT GGTCCGGCGA CAAAAGCGGT ATAAGCCTGT ATAAAGCTGC GGCCAAATTT AAATACGGTC CGGTTTGGGC GAGGGCAGGT TACATTCAGC CAACTGGTCA AACGCTGTTA GCGCCGCACT GGAGCTTTAT GCCAGGTACT TATCAGGGGG CGGAAGCCGG GGCGAATTTT GATTACGGCG ATGCTGGTGC CTTGAGTTTC TCCTACATGT GGACCAACGA ATACAAAGCG CCGTGGCATC TGGAAATGGA TGAGTTTTAT CAGAACGATA AAACCACCAA AGTTGATTAC CTGCACTCCA TCGGTGCGAA ATACGACTTC AAAAATAACT TCGTACTGGA AGCGGCATTT GGTCAGGCGG AAGGGTATAT CGATCAATAT TTTGCCAAAG CCAGCTACAA ATTTGATATC GCCGGTAGCC CGTTAACCAC CAGCTACCAG TTCTATGGTA CGCGCGATAA AGTTGACGAT CGCAGCGTCA ACGACCTTTA TGACGGCACC GCCTGGCTGC AAGCGTTGAC CTTTGGTTAC CGGGCGGCTG ACGTAGTGGA TTTGCGCCTC GAAGGCACCT GGGTTAAGGC TGACGGTCAG CAGGGATACT TCCTGCAACG TATGACTCCA ACCTACGCTT CCTCCAACGG CCGCCTGGAT ATCTGGTGGG ATAACCGTTC CGACTTCAAC GCCAACGGCG AAAAAGCGGT CTTCTTCGGT GCGATGTATG ACCTGAAAAA CTGGAATCTT CCAGGCTTCG CCATCGGCGC TTCCTACGTT TACGCATGGG ATGCTAAACC TGCGACCTGG CAGAGCAATC CGGATGCGTA CTACGACAAA AACCGGACTA TTGAAGAGTC TGCATACAGC CTGGATGCGG TCTACACCAT TCAGGACGGT CGCGCCAAAG GCACGATGTT CAAACTGCAC TTCACCGAAT ACGACAACCA CTCCGACATC CCAAGCTGGG GCGGTGGTTA CGGCAACATC TTCCAGGATG AGCGTGACGT GAAATTTATG GTAATCGCAC CATTCACCAT CTTCTGA
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Protein sequence | MRTFSGKRST LALAIAGVTA MSGFMAMPEA RAEGFIDDST LTGGIYYWQR ERDRKDVTDG DKYKTNLSHS TWNANLDFQS GYAADMFGLD IAAFTAIEMA ENGDSSHPNE IAFSKSNKAY DEDWSGDKSG ISLYKAAAKF KYGPVWARAG YIQPTGQTLL APHWSFMPGT YQGAEAGANF DYGDAGALSF SYMWTNEYKA PWHLEMDEFY QNDKTTKVDY LHSIGAKYDF KNNFVLEAAF GQAEGYIDQY FAKASYKFDI AGSPLTTSYQ FYGTRDKVDD RSVNDLYDGT AWLQALTFGY RAADVVDLRL EGTWVKADGQ QGYFLQRMTP TYASSNGRLD IWWDNRSDFN ANGEKAVFFG AMYDLKNWNL PGFAIGASYV YAWDAKPATW QSNPDAYYDK NRTIEESAYS LDAVYTIQDG RAKGTMFKLH FTEYDNHSDI PSWGGGYGNI FQDERDVKFM VIAPFTIF
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