Gene EcE24377A_0438 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_0438 
SymbolsecD 
ID5589957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009801 
Strand
Start bp460522 
End bp462369 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content53% 
IMG OID640924162 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001461589 
Protein GI157156778 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAACC GTTATCCTTT GTGGAAGTAC GTCATGCTGA TCGTGGTGAT TGTCATCGGT 
CTGCTGTATG CGCTTCCCAA CCTGTTTGGT GAGGATCCGG CTGTTCAGAT CACTGGTGCG
CGCGGAGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA
AAAATAACTG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACTCC
ACTGACACCC AGCTGCGCGC TCGTGAAGCA TTAATGGGCG TTATGGGTGA CAAATACGTC
GTGGCGCTTA ACCTTGCCCC GGCAACGCCG CGCTGGCTGG CAGCTATTCA CGCTGAGCCG
ATGAAGCTCG GCCTTGACCT GCGTGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAC
ACCGCGCTTG GCAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA TCTGCGTGAA
AAGGGCATCC CGTATACCAC CGTTCGTAAA GAAAACAACT ACGGCCTGAG CATTACTTTC
CGCGATGCTA AAGCTCGTGA TGAAGCCATT GCGTATCTGA GCAAGCGCCA TCCGGACCTG
GTGATTAGTA GCCAGGGCAG CAACCAGCTG CGTGCGGTAA TGAGCGATGC TCGTCTGAGT
GAAGCGCGTG AATATGCGGT GCAGCAGAAC ATCAATATCC TGCGTAACCG TGTAAACCAA
CTTGGCGTGG CGGAGCCGGT GGTTCAGCGT CAGGGTGCTG ACCGTATCGT TGTTGAACTG
CCAGGTATTC AGGACACTGC GCGTGCGAAA GAGATTCTGG GTGCGACGGC AACGCTGGAA
TTCCGTCTGG TAAACACCAA CGTTGACCAG GCCGCTGCGG CATCCGGTCG CGTACCGGGC
GACTCTGAAG TGAAACAGAC CCGCGAAGGT CAGCCAGTTG TGCTGTACAA ACGCGTAATT
CTGACCGGTG ACCATATCAC CGACTCCACT TCCAGCCAGG ACGAATACAA CCAACCGCAG
GTTAACATCT CGCTCGATAG CGCTGGTGGT AACATCATGT CTAACTTCAC TAAGGACAAC
ATCGGCAAAC CGATGGCAAC CCTGTTTGTG GAGTACAAAG ACAGCGGTAA GAAAGATGCA
AATGGTCGTG CGGTTCTGGT GAAACAGGAA GAGGTGATTA ACATCGCCAA CATCCAGTCT
CGTCTGGGTA ACAGCTTCCG TATCACCGGC ATCAACAACC CGAACGAAGC CCGTCAGCTG
TCACTGCTGC TGCGTGCCGG TGCGTTGATC GCGCCGATTC AGATTGTTGA AGAACGTACC
ATTGGCCCAA CCCTGGGTAT GCAGAACATT GAACAGGGGC TGGAGGCTTG CCTTGCCGGT
CTGCTGGTTT CTATTCTGTT CATGATCATC TTCTATAAGA AGTTTGGTCT GATTGCGACC
AGTGCTCTGA TTGCCAACTT GATCTTAATC GTCGGCATTA TGTCGCTGTT GCCAGGCGCA
ACGCTGAGTA TGCCAGGTAT CGCGGGTATC GTCTTAACCC TTGCGGTGGC GGTCGATGCG
AACGTACTGA TCAACGAACG TATTAAAGAA GAGTTGAGCA ACGGACGTAC TGTTCAACAG
GCAATTGATG AAGGTTATCG TGGCGCATTC AGTTCTATCT TCGATGCGAA CATCACCACG
CTGATTAAAG TCATCATCCT GTACGCAGTG GGTACCGGGG CAATTAAAGG GTTCGCGATT
ACTACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTGTCGGTAC GCGTGCCATC
GTAAACCTGC TATATGGCGG CAAGCGCGTC AAGAAGCTGT CAATCTGA
 
Protein sequence
MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL IQVQKTLQEE 
KITAKSVALE EGAILARFDS TDTQLRAREA LMGVMGDKYV VALNLAPATP RWLAAIHAEP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF
RDAKARDEAI AYLSKRHPDL VISSQGSNQL RAVMSDARLS EAREYAVQQN INILRNRVNQ
LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAASGRVPG
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG INNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGMQNI EQGLEACLAG LLVSILFMII FYKKFGLIAT
SALIANLILI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ
AIDEGYRGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI
VNLLYGGKRV KKLSI