| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0424 |
|---|
| Symbol | sbcC |
|---|
| ID | 5590405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 445485 |
|---|
| End bp | 448628 |
|---|
| Gene Length | 3144 bp |
|---|
| Protein Length | 1047 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640924148 |
|---|
| Product | exonuclease subunit SbcC |
|---|
| Protein accession | YP_001461575 |
|---|
| Protein GI | 157155185 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TCAGCCTGCG CCTGAAAAAC CTGAACTCAT TAAAAGGCGA ATGGAAGATT
GATTTCACCC GCGAGCCGTT CGCCAGCAAC GGGCTGTTTG CTATTACCGG CCCAACAGGT
GCGGGGAAAA CCACCCTGCT GGACGCCATT TGTCTGGCGC TGTATCACGA AACTCCGCGT
CTCTCTAACG TTTCACAATC GCAAAATGAT CTCATGACCC GCGATACCGC CGAATGTCTG
GCGGAGGTGG AGTTTGAAGT GAAAGGTGAA GCGTACCGTG CATTCTGGAG CCAGAATCGG
GCGCGTAACC AACCCGACGG TAATTTGCAG GTGCCACGCG TAGAGCTGGC GCGCTGCGCC
GACGGCAAAA TTCTCGCCGA CAAAGTGAAA GATAAGCTGG AACTGACAGC GACGTTAACC
GGGCTGGATT ACGGGCGCTT CACCCGTTCG ATGCTGCTTT CGCAGGGGCA ATTTGCTGCC
TTCCTGAATG CCAAACCCAA AGAACGCGCG GAATTGCTCG AGGAGTTAAC CGGCACTGAA
ATCTACGGGC AAATCTCGGC GATGGTTTTT GAGCAGCACA AATCGTCCCG CACAGAGCTG
GAGAAGCTGC AAGCGCAGGC CAGCGGCGTC GCGTTGCTCA CGCCGGAACA AGTGCAATCG
CTGACAGCGA GTTTGCAGGT ACTTACTGAC GAAGAAAAAC AGTTACTTAC CGCGCAGCAG
CAAGAACAAC AATCACTAAA CTGGTTAACG CGTCTGGACG AATTGCAGCA AGAAGCCAGC
CGCCGTCAGC AGGCCTTGCA ACAGGCGTTA GCCGAAGAAG AAAAAGCGCA ACCTCAACTG
GCGGCGCTCA GTCTGGCACA ACCGGCACGA AATCTTCGTC CGCACTGGGA ACGCATCGCA
GAACACAGCG CGGCGCTGGC GCATACTCGC CAGCAGATTG AAGAAGTAAA TACTCGCTTA
CAGAGCACAA TGGTGCTTCG CGCGAGCATT CGCCACCACG CGGCGAATCA GTCAGCAGAA
TTACAGCAGC AGCAACAAAG CCTGAATACC TGGTTACAGG AACACGACCG CTTCCGTCAG
TGGAACAACG AACTGGCGGG TTGGCGTGCG CAGTTCTCCC AACAAACCAG CGATCGCGAG
CATCTGCGGC AATGGCAGCA ACAGTTAACC CATGCTGAGC AAAAACTTAA TACGCTTGCG
GCGATCACGT TGACGTTAAC CGCCGATGAA GTTGCTAGCG CCCTGGCGCA ACATGCCGAG
CAACGCCCAC TGCGTCAGCG CCTGGTCGCG CTGCATGGGC AGATTGTTCC CCAACAAAAA
CGTCTGGCGC AGTTAATGGT CACTATCCAG AATGTCACTC TGGAACAGAC GCAACGTAAT
GTCGCACTTA ACGAAATGCG CCAGCGTTAT AAAGAAAAGA CGCAGCAACT TGCCGATGTG
AAAACCATTT GCGAGCAGGA AGCGCGCATC AAAACGCTGG AAGCCCAGCG TGCACAGTTA
CAGGCGGGTC AGCCTTGTCC ACTTTGTGGT TCCACCAGCC ACCCGGCGGT CGAGGCGTAT
CAGGCGCTGG AGCCTGGCGT TAATCAGTCT CGATTACTGG CGCTGGAAAA CGAAGTTAAA
AAGCTCGGCG AAGAAGGTGC GGCGCTGCGC GGGCAACTGG ATGCATTAAC GAAGCAGCTT
CAGCGCGATG AAAACGAAGC GCAAAGCCTC CGACAAGATG AGCAAGCACT TACTCAACAA
TGGCAAGCCG TCACGGCCAG CCTCAATATC ACCTTGCAGC CACAGGACGA TATTCAACCG
TGGCTTGATG CACAAGATGA GCACGAACGC CAGCTGCGGT TACTCAGCCA ACGACATGAA
TTACAAGGGC AGATTGCCGC GCATAATCAG CAAATTATCC AGTATCAACA GCAAATTGAA
CAACGCCAGC AGCAGCTCTT AACGGCATTG GCGGGTTATG CACTGACATT GCCACAGGAA
GATGAAGAAG AGAGCTGGTT GGCGACACGT CAGCAAGAAG CGCAGAGCTG GCAGCAACGC
CAGAACGAAT TAACCGCGCT GCAAAACCGT ATTCAGCAGC TGACGCCGAT TCTGGAAACG
TTGCCGCAAA GTGATGATCT CCCGCACAGC GAAGATACTG TGGCGCTGGA TAACTGGCGG
CAGGTTCATG AACAATGTCT CGCATTACAC AGCCAGCAGC AGACGTTACA GCAACAGGAT
GTTCTGGCGG CGCAAAGTCT GCAAAAAGCC CAGGCGCAGT TTGACACCGC GCTACAGGCC
AGCGTCTTTG ACGATCAGCA GGCGTTCCTT GCGGCGCTAA TGGATGAACA AACACTAACG
CAGCTGGAAC AGCTCAAGCA GAATCTGGAA AACCAGCGCC GTCAGGCGCA AACGCTGGTC
ACTCAGACAG CAGAAACGCT GGCACAGCAT CAACAACACC GACCTGACGG GTTGGCTCTC
ACTGTGACGG TGGAGCAGAT TCAGCAAGAG TTAGCGCAAA CTCACCAAAA GTTGCGTGAA
AACACCACGA GTCAAGGCGA GATTCGCCAG CAGCTGAAGC AGGATGCAGA TAACCGTCAG
CAACAACAAA CCTTAATGCA GCAAATTGCT CAAATGACGC AGCAGGTTGA GGACTGGGGA
TATCTGAATT CGCTAATAGG TTCCAAAGAG GGCGATAAAT TCCGCAAGTT TGCCCAGGGG
CTGACGCTGG ATAATTTAGT CCATCTCGCT AATCAGCAAC TTACCCGGCT GCACGGGCGC
TATCTGTTAC AGCGCAAAGC CAGCGAGGCG CTGGAAGTCG AGGTTGTTGA TACCTGGCAG
GCAGATGCGG TACGCGATAC CCGTACCCTT TCCGGCGGCG AAAGTTTCCT CGTTAGTCTG
GCGCTGGCGC TGGCGCTTTC GGATCTGGTC AGCCATAAAA CACGTATTGA CTCGCTGTTC
CTTGATGAAG GTTTTGGCAC GCTGGATAGC GAAACGCTGG ATACCGCCCT TGATGCGCTG
GATGCCCTGA ACGCCAGTGG CAAAACCATC GGTGTGATTA GCCACGTAGA AGCGATGAAA
GAGCGTATTC CGGTGCAGAT CAAAGTGAAA AAGATCAACG GCCTGGGCTA CAGCAAACTG
GAAAGTACGT TTGCAGTGAA ATAA
|
|---|
| Protein sequence | MKILSLRLKN LNSLKGEWKI DFTREPFASN GLFAITGPTG AGKTTLLDAI CLALYHETPR
LSNVSQSQND LMTRDTAECL AEVEFEVKGE AYRAFWSQNR ARNQPDGNLQ VPRVELARCA
DGKILADKVK DKLELTATLT GLDYGRFTRS MLLSQGQFAA FLNAKPKERA ELLEELTGTE
IYGQISAMVF EQHKSSRTEL EKLQAQASGV ALLTPEQVQS LTASLQVLTD EEKQLLTAQQ
QEQQSLNWLT RLDELQQEAS RRQQALQQAL AEEEKAQPQL AALSLAQPAR NLRPHWERIA
EHSAALAHTR QQIEEVNTRL QSTMVLRASI RHHAANQSAE LQQQQQSLNT WLQEHDRFRQ
WNNELAGWRA QFSQQTSDRE HLRQWQQQLT HAEQKLNTLA AITLTLTADE VASALAQHAE
QRPLRQRLVA LHGQIVPQQK RLAQLMVTIQ NVTLEQTQRN VALNEMRQRY KEKTQQLADV
KTICEQEARI KTLEAQRAQL QAGQPCPLCG STSHPAVEAY QALEPGVNQS RLLALENEVK
KLGEEGAALR GQLDALTKQL QRDENEAQSL RQDEQALTQQ WQAVTASLNI TLQPQDDIQP
WLDAQDEHER QLRLLSQRHE LQGQIAAHNQ QIIQYQQQIE QRQQQLLTAL AGYALTLPQE
DEEESWLATR QQEAQSWQQR QNELTALQNR IQQLTPILET LPQSDDLPHS EDTVALDNWR
QVHEQCLALH SQQQTLQQQD VLAAQSLQKA QAQFDTALQA SVFDDQQAFL AALMDEQTLT
QLEQLKQNLE NQRRQAQTLV TQTAETLAQH QQHRPDGLAL TVTVEQIQQE LAQTHQKLRE
NTTSQGEIRQ QLKQDADNRQ QQQTLMQQIA QMTQQVEDWG YLNSLIGSKE GDKFRKFAQG
LTLDNLVHLA NQQLTRLHGR YLLQRKASEA LEVEVVDTWQ ADAVRDTRTL SGGESFLVSL
ALALALSDLV SHKTRIDSLF LDEGFGTLDS ETLDTALDAL DALNASGKTI GVISHVEAMK
ERIPVQIKVK KINGLGYSKL ESTFAVK
|
|---|
| |