Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_0245 |
Symbol | |
ID | 5589586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 263220 |
End bp | 265361 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640923974 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001461404 |
Protein GI | 157159093 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCAACCG GATTACGTTT CACGCTGGAA GTGGACGGCC TGCCACCGGA TGCTTTTGCG GTGGTCTCCT TTCATCTGAA CCAGTCACTC TCTTCGCTTT TTTCCCTCGA TCTCTCTCTG GTCAGCCAGC AGTTTCTCTC CCTTGAATTC CAGCAGATCC TCGACAAAAT GGCCTACCTG ACGATATGGC AGGGCGATGA CGTACAGCGC CGGGTGAAAG GTATGGTGAC CTGGTTTGAA CTGGGGGAGA ACGACAAAAA CCAGATGCTG TACAGCATGA AGGTGTGCCC ACCGCTGTGG CGCACAGGGC TGCGCCAGAA CTTCCGTATC TTCCAGAATG AGGACATCGA AAGCATCCTT GGCACGATAT TGCAGGAAAA CGGGGTGACC GAGTGGAGCC CGCTGTTCAG CGATCCACAT CCTTCCCGTG AGTTTTGTGT CCAGTACGGT GAGACTGATT ACGATTTCCT GTGCCGGATG GCGGCGGAGG AAGGCATCTT CTTTTATGAG GAGCACGCGC AAAAAAGTAC CGACCAGAGC CTGGTCCTGT GCGATACCGT GCGTTATCTG CCGGAGTCCT TTGAGATCCC CTGGAATCCG AACACCCGTA CCGAGGTGAG CACCCTCTGC ATCAGCCAGT TTCGCTACAG CGCACAAATC CGCCCTTCTT CCGTGGTGAC CAAAGACTAC ACCTTTAAAC GACCCGGCTG GGCAGGGCGT TTTGATCAGG AAGGCCAGTA CCAGGATTAC CAGCGCACAC AGTATGAAGT GTATGACTAC CCCGGACGTT TCAAGGGTGC CCACGGGCAG AACTTTGCCC GCTGGCAGAT GGATGGCTGG CGCAACAACG CAGAAGTGGC GCGCGGAACA AGCCGTTCGC CGGAGATATG GCCGGGACGG CGAATTGTGC TGACGGGGCA TCCGCAGGCG AACCTGAACC GGGAATGGCA GGTGGTGGCG AGCGATCTTC ACGGCGAACA GCCGCAGGCG GTACCGGGAC GCAGGGGTTC AGGCACCACG CTGGATAACC ACTTTGCGGT AATCCCGGCA GACCGGACAT GGCGGCCACA GCCGTTGCTG AAACCGCTGG TGGACGGCCC GCAGAGCGCC GTCGTGACGG GACCGGCAGG CGAGGAAATC TTCTGTGATG AACATGGCCG CGTGCGGGTG AAATTTAACT GGGACCGCTA TAACCCGTCA AACCAGGAAA GTTCATGCTG GATCCGTGTG GCACAGGCGT GGGCAGGCAC CGGCTTTGGT AACCTGGCGA TACCGCGTGT GGGTCAGGAG GTCATTGTGG ACTTCCTCAA CGGCGATCCG GACCAGCCGA TCATTATGGG GCGTACCTAC CACCAGGAAA ACCGCACCCC CGGCAGCCTG CCGGGGACGA AGACGCAGAT GACGATCCGC TCGAAAACCT ATAAGGGCAG CGGGTTTAAT GAACTGAAGT TTGACGATGC GACAGGGAAA GAACAGGTCT ACATCCACGC GCAGAAGAAC ATGAACACCG AGGTGCTGAA TAACCGCACC ACTGATGTGA TAAACAACCA TGCCGAAAAA ATAGGTAACA ACCAGGCGAT CACCGTTACC AATAACCAGA TCCAGAACAT TGGCGTTAAT CAGATACAGA CGGTTGGTGT CAACCAGGTG GAAACGGTGG GCAGTAACCA GATTATCAAA GTGGGATCAA ACCAGGTTGA AAAGGTGGGG ATCATTCGTG CGCTGACGGT GGGTGTGGCT TACCAGACGA CGGTAGGCGG CATTATGAAT ACCTCGGTGG CGTTGTTGCA GTCCTCACAG GTAGGGCTGC ATAAATCACT GATGGTGGGA ATGGGCTACA GCGTCAATGT GGGGAATAAC GTCACCTTCT CGGTGGGCAA GACAATGAAG GAAAACACCG GACAAACAGC AGTTTATTCT GCCGGTGAGC ATCTTGAACT CTGCTGTGGT AAGGCAAGGC TGGTGCTGAC GAAGGACGGA AGCATATTTC TCAATGGTAC GCACATTCAT CTGGAAGGGG AGTCGGATGT GAACGGTGAT GCGCCAGTGA TTAACTGGAA CTGTGGTGCC ACACAACCTG TACCGGATGC GCCTGTGCCG AAAGATTTAC CCCCCGGAAT GCCGGATATG CGGCAATTTT GA
|
Protein sequence | MSTGLRFTLE VDGLPPDAFA VVSFHLNQSL SSLFSLDLSL VSQQFLSLEF QQILDKMAYL TIWQGDDVQR RVKGMVTWFE LGENDKNQML YSMKVCPPLW RTGLRQNFRI FQNEDIESIL GTILQENGVT EWSPLFSDPH PSREFCVQYG ETDYDFLCRM AAEEGIFFYE EHAQKSTDQS LVLCDTVRYL PESFEIPWNP NTRTEVSTLC ISQFRYSAQI RPSSVVTKDY TFKRPGWAGR FDQEGQYQDY QRTQYEVYDY PGRFKGAHGQ NFARWQMDGW RNNAEVARGT SRSPEIWPGR RIVLTGHPQA NLNREWQVVA SDLHGEQPQA VPGRRGSGTT LDNHFAVIPA DRTWRPQPLL KPLVDGPQSA VVTGPAGEEI FCDEHGRVRV KFNWDRYNPS NQESSCWIRV AQAWAGTGFG NLAIPRVGQE VIVDFLNGDP DQPIIMGRTY HQENRTPGSL PGTKTQMTIR SKTYKGSGFN ELKFDDATGK EQVYIHAQKN MNTEVLNNRT TDVINNHAEK IGNNQAITVT NNQIQNIGVN QIQTVGVNQV ETVGSNQIIK VGSNQVEKVG IIRALTVGVA YQTTVGGIMN TSVALLQSSQ VGLHKSLMVG MGYSVNVGNN VTFSVGKTMK ENTGQTAVYS AGEHLELCCG KARLVLTKDG SIFLNGTHIH LEGESDVNGD APVINWNCGA TQPVPDAPVP KDLPPGMPDM RQF
|
| |