Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_0152 |
Symbol | hrpB |
ID | 5588840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 163571 |
End bp | 166000 |
Gene Length | 2430 bp |
Protein Length | 809 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640923881 |
Product | ATP-dependent RNA helicase HrpB |
Protein accession | YP_001461318 |
Protein GI | 157156250 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00171749 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTCGTCGT TGCCCGTTGC TGCCGTCTTA TCTGAATTAC TTACCGCTCT CGATTGTGCG CCGCAGGTAT TATTAAGTGC GCCGACCGGG GCCGGGAAAT CAACCTGGCT GCCGCTGCAA CTGCTGGCGC ATCCCGGCAT TAACGGGAAA ATTATCCTGC TGGAGCCGCG TCGTCTGGCG GCGCGTAACG TCGCGCAACG ACTGGCGGAG CTGCTTAACG AAAAGCCAGG CGATACCGTT GGCTACCGGA TGCGTGCGCA AAACTGCGTC GGGCCGAATA CCCGCCTGGA AGTGGTTACC GAAGGCGTGC TGACGCGCAT GATCCAGCGT GACCCGGAAC TGAGCGGTGT TGGATTGGTG ATCCTCGATG AATTTCATGA GCGCAGCTTG CAGGCGGATT TGGCGTTGGC GCTGTTACTC GATGTGCAAC AAGGTCTGCG TGATGACCTT AAACTGCTGA TTATGTCGGC TACGCTGGAT AACGACCGCT TGCAGCAAAT GCTGCCAGAA GCGCCCGTCG TCATCTCAGA AGGGCGCTCG TTTCCGGTTG AACGCCATTA TTTACCGCTG CCCGCGCATC AGCGTTTTGA CGAAGCCGTT GCGGTAGCCA CCGCCGAAAT GCTGCGTCAG GAAAGCGGAT CATTACTGTT ATTTTTACCT GGCGTCGGAG AAATTCAGCG TGTGCAGGAA CAACTGGCTT CGCGCATCGG CAGTGATGTG TTGCTCTGCC CGCTGTATGG CGCGTTGTCG CTGAACGATC AGCGAAAAGC GATCCTCCCG GCACCGCAAG GGATGCGCAA AGTGGTGCTG GCGACCAATA TTGCTGAAAC CAGTTTAACC ATTGAAGGTA TTCGTCTGGT GGTGGATTGT GCCCAGGAGC GTGTGGCGCG TTTTGATCCG CGCACGGGGC TTACGCGACT GATTACTCAA CGCGTTAGCC AGGCATCCAT GACGCAGCGT GCCGGGCGCG CCGGGCGTCT GGAGCCGGGT ATCAGCCTGC ATTTAATCGC CAAAGAACAA GCAGAACGCG CCGCGGCGCA AAGTGAACCG GAGATCTTAC AAAGCGATCT TTCCGGTTTG CTGATGGAAT TACTGCAATG GGGATGCAGC GATCCGGCGC AGATGAGCTG GCTGGATCAA CCGCCAACGG TGAATCTACT GGCCGCGAAA CGCCTGTTAC AAATGCTGGG GGCGCTGGAG GGTGAACGGC TTAGTGCGCA GGGGCAAAAA ATGGCAGCGC TGGGTAACGA TCCGCGTTTA GCGGCAATGC TGGTTAGCGC GAAGAACGAC GACGAAGCTG CTACCGCGGC AAAAATTGCC GCCATTCTCG AAGAGCCGCC ACGGATGGGC AATAGTGACC TGGGCGTGGC GTTTTCGCGC AATCAACCAG CCTGGCAGCA ACGTAGTCAG CAACTGTTAA AACGCTTAAA CGTACGTGGC GGTGAGGCAG ACAGTTCGCT TATCGCGCCG CTACTTGCCG GGGCGTTTGC CGATCGCATT GCTCGTCGCC GTGGGCAAGA TGGACGCTAT CAACTGGCAA ACGGCATGGG AGCGATGCTC GATGCCAACG ACGCGCTAAG CCGCCACGAA TGGTTGATCG CACCGTTATT ATTGCAGGGC AGCGCCTCGC CGGATGCGCG GATTTTACTG GCGTTACCGG TCGATATTGA TGAATTAGTA CAACGCTGTC CGCAGCTGGT GCAGCAATCT GACACCGTGG AATGGGATGA CGCGCAAGGT ACGCTGAAAG CCTGGCGTCG GCTGCAAATC GGTCAGTTGA CGGTGAAAGT GCAGCCACTG GCGAAACCGT CAGAAGACGA GTTGCATCAG GCGATGCTTA ACGGCATTCG TGAAAAAGGT TTAAGCGTGC TCAACTGGAC GGCGGAAGCG GAACAGCTAC GCTTGCGTTT GTTATGCGCC GCAAAGTGGT TGCCGGAATA TGACTGGCCA GCGGTTGATG ATGAAAGTTT ATTGGCGACG CTGGAAACGT GGCTGCTGCC ACATATGACT GGCGTACATT CACTACGCGG CCTGAAATCA CTCGACATTT ATCAGGCACT ACGCGGATTA CTTGATTGGG GAATGCAGCA ACGTCTGGAT AGTGAATTGC CTGCGCATTA CACTGTGCCG ACGGGAAGCC GGATCGCCAT TCGTTATCAT GAAGATAACC CGCCCGCGCT GGCGGTGAGA ATGCAAGAGA TGTTTGGCGA GGCCACCAAT CCGACGATCG CCCAGGGGCG CGTGCCGCTG GTGCTGGAGT TGCTTTCACC TGCCCAAAGG CCATTACAAA TCACACGAGA TTTGAGCGCC TTCTGGAAAG GAGCGTACCG TGAGGTGCAA AAAGAGATGA AAGGGCGTTA TCCCAAACAT GTCTGGCCGG ACGACCCGGC AAATACTGCA CCGACGCGAC GGACGAAAAA GTATTCGTAA
|
Protein sequence | MSSLPVAAVL SELLTALDCA PQVLLSAPTG AGKSTWLPLQ LLAHPGINGK IILLEPRRLA ARNVAQRLAE LLNEKPGDTV GYRMRAQNCV GPNTRLEVVT EGVLTRMIQR DPELSGVGLV ILDEFHERSL QADLALALLL DVQQGLRDDL KLLIMSATLD NDRLQQMLPE APVVISEGRS FPVERHYLPL PAHQRFDEAV AVATAEMLRQ ESGSLLLFLP GVGEIQRVQE QLASRIGSDV LLCPLYGALS LNDQRKAILP APQGMRKVVL ATNIAETSLT IEGIRLVVDC AQERVARFDP RTGLTRLITQ RVSQASMTQR AGRAGRLEPG ISLHLIAKEQ AERAAAQSEP EILQSDLSGL LMELLQWGCS DPAQMSWLDQ PPTVNLLAAK RLLQMLGALE GERLSAQGQK MAALGNDPRL AAMLVSAKND DEAATAAKIA AILEEPPRMG NSDLGVAFSR NQPAWQQRSQ QLLKRLNVRG GEADSSLIAP LLAGAFADRI ARRRGQDGRY QLANGMGAML DANDALSRHE WLIAPLLLQG SASPDARILL ALPVDIDELV QRCPQLVQQS DTVEWDDAQG TLKAWRRLQI GQLTVKVQPL AKPSEDELHQ AMLNGIREKG LSVLNWTAEA EQLRLRLLCA AKWLPEYDWP AVDDESLLAT LETWLLPHMT GVHSLRGLKS LDIYQALRGL LDWGMQQRLD SELPAHYTVP TGSRIAIRYH EDNPPALAVR MQEMFGEATN PTIAQGRVPL VLELLSPAQR PLQITRDLSA FWKGAYREVQ KEMKGRYPKH VWPDDPANTA PTRRTKKYS
|
| |