Gene EcE24377A_0152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_0152 
SymbolhrpB 
ID5588840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009801 
Strand
Start bp163571 
End bp166000 
Gene Length2430 bp 
Protein Length809 aa 
Translation table11 
GC content57% 
IMG OID640923881 
ProductATP-dependent RNA helicase HrpB 
Protein accessionYP_001461318 
Protein GI157156250 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00171749 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGTCGT TGCCCGTTGC TGCCGTCTTA TCTGAATTAC TTACCGCTCT CGATTGTGCG 
CCGCAGGTAT TATTAAGTGC GCCGACCGGG GCCGGGAAAT CAACCTGGCT GCCGCTGCAA
CTGCTGGCGC ATCCCGGCAT TAACGGGAAA ATTATCCTGC TGGAGCCGCG TCGTCTGGCG
GCGCGTAACG TCGCGCAACG ACTGGCGGAG CTGCTTAACG AAAAGCCAGG CGATACCGTT
GGCTACCGGA TGCGTGCGCA AAACTGCGTC GGGCCGAATA CCCGCCTGGA AGTGGTTACC
GAAGGCGTGC TGACGCGCAT GATCCAGCGT GACCCGGAAC TGAGCGGTGT TGGATTGGTG
ATCCTCGATG AATTTCATGA GCGCAGCTTG CAGGCGGATT TGGCGTTGGC GCTGTTACTC
GATGTGCAAC AAGGTCTGCG TGATGACCTT AAACTGCTGA TTATGTCGGC TACGCTGGAT
AACGACCGCT TGCAGCAAAT GCTGCCAGAA GCGCCCGTCG TCATCTCAGA AGGGCGCTCG
TTTCCGGTTG AACGCCATTA TTTACCGCTG CCCGCGCATC AGCGTTTTGA CGAAGCCGTT
GCGGTAGCCA CCGCCGAAAT GCTGCGTCAG GAAAGCGGAT CATTACTGTT ATTTTTACCT
GGCGTCGGAG AAATTCAGCG TGTGCAGGAA CAACTGGCTT CGCGCATCGG CAGTGATGTG
TTGCTCTGCC CGCTGTATGG CGCGTTGTCG CTGAACGATC AGCGAAAAGC GATCCTCCCG
GCACCGCAAG GGATGCGCAA AGTGGTGCTG GCGACCAATA TTGCTGAAAC CAGTTTAACC
ATTGAAGGTA TTCGTCTGGT GGTGGATTGT GCCCAGGAGC GTGTGGCGCG TTTTGATCCG
CGCACGGGGC TTACGCGACT GATTACTCAA CGCGTTAGCC AGGCATCCAT GACGCAGCGT
GCCGGGCGCG CCGGGCGTCT GGAGCCGGGT ATCAGCCTGC ATTTAATCGC CAAAGAACAA
GCAGAACGCG CCGCGGCGCA AAGTGAACCG GAGATCTTAC AAAGCGATCT TTCCGGTTTG
CTGATGGAAT TACTGCAATG GGGATGCAGC GATCCGGCGC AGATGAGCTG GCTGGATCAA
CCGCCAACGG TGAATCTACT GGCCGCGAAA CGCCTGTTAC AAATGCTGGG GGCGCTGGAG
GGTGAACGGC TTAGTGCGCA GGGGCAAAAA ATGGCAGCGC TGGGTAACGA TCCGCGTTTA
GCGGCAATGC TGGTTAGCGC GAAGAACGAC GACGAAGCTG CTACCGCGGC AAAAATTGCC
GCCATTCTCG AAGAGCCGCC ACGGATGGGC AATAGTGACC TGGGCGTGGC GTTTTCGCGC
AATCAACCAG CCTGGCAGCA ACGTAGTCAG CAACTGTTAA AACGCTTAAA CGTACGTGGC
GGTGAGGCAG ACAGTTCGCT TATCGCGCCG CTACTTGCCG GGGCGTTTGC CGATCGCATT
GCTCGTCGCC GTGGGCAAGA TGGACGCTAT CAACTGGCAA ACGGCATGGG AGCGATGCTC
GATGCCAACG ACGCGCTAAG CCGCCACGAA TGGTTGATCG CACCGTTATT ATTGCAGGGC
AGCGCCTCGC CGGATGCGCG GATTTTACTG GCGTTACCGG TCGATATTGA TGAATTAGTA
CAACGCTGTC CGCAGCTGGT GCAGCAATCT GACACCGTGG AATGGGATGA CGCGCAAGGT
ACGCTGAAAG CCTGGCGTCG GCTGCAAATC GGTCAGTTGA CGGTGAAAGT GCAGCCACTG
GCGAAACCGT CAGAAGACGA GTTGCATCAG GCGATGCTTA ACGGCATTCG TGAAAAAGGT
TTAAGCGTGC TCAACTGGAC GGCGGAAGCG GAACAGCTAC GCTTGCGTTT GTTATGCGCC
GCAAAGTGGT TGCCGGAATA TGACTGGCCA GCGGTTGATG ATGAAAGTTT ATTGGCGACG
CTGGAAACGT GGCTGCTGCC ACATATGACT GGCGTACATT CACTACGCGG CCTGAAATCA
CTCGACATTT ATCAGGCACT ACGCGGATTA CTTGATTGGG GAATGCAGCA ACGTCTGGAT
AGTGAATTGC CTGCGCATTA CACTGTGCCG ACGGGAAGCC GGATCGCCAT TCGTTATCAT
GAAGATAACC CGCCCGCGCT GGCGGTGAGA ATGCAAGAGA TGTTTGGCGA GGCCACCAAT
CCGACGATCG CCCAGGGGCG CGTGCCGCTG GTGCTGGAGT TGCTTTCACC TGCCCAAAGG
CCATTACAAA TCACACGAGA TTTGAGCGCC TTCTGGAAAG GAGCGTACCG TGAGGTGCAA
AAAGAGATGA AAGGGCGTTA TCCCAAACAT GTCTGGCCGG ACGACCCGGC AAATACTGCA
CCGACGCGAC GGACGAAAAA GTATTCGTAA
 
Protein sequence
MSSLPVAAVL SELLTALDCA PQVLLSAPTG AGKSTWLPLQ LLAHPGINGK IILLEPRRLA 
ARNVAQRLAE LLNEKPGDTV GYRMRAQNCV GPNTRLEVVT EGVLTRMIQR DPELSGVGLV
ILDEFHERSL QADLALALLL DVQQGLRDDL KLLIMSATLD NDRLQQMLPE APVVISEGRS
FPVERHYLPL PAHQRFDEAV AVATAEMLRQ ESGSLLLFLP GVGEIQRVQE QLASRIGSDV
LLCPLYGALS LNDQRKAILP APQGMRKVVL ATNIAETSLT IEGIRLVVDC AQERVARFDP
RTGLTRLITQ RVSQASMTQR AGRAGRLEPG ISLHLIAKEQ AERAAAQSEP EILQSDLSGL
LMELLQWGCS DPAQMSWLDQ PPTVNLLAAK RLLQMLGALE GERLSAQGQK MAALGNDPRL
AAMLVSAKND DEAATAAKIA AILEEPPRMG NSDLGVAFSR NQPAWQQRSQ QLLKRLNVRG
GEADSSLIAP LLAGAFADRI ARRRGQDGRY QLANGMGAML DANDALSRHE WLIAPLLLQG
SASPDARILL ALPVDIDELV QRCPQLVQQS DTVEWDDAQG TLKAWRRLQI GQLTVKVQPL
AKPSEDELHQ AMLNGIREKG LSVLNWTAEA EQLRLRLLCA AKWLPEYDWP AVDDESLLAT
LETWLLPHMT GVHSLRGLKS LDIYQALRGL LDWGMQQRLD SELPAHYTVP TGSRIAIRYH
EDNPPALAVR MQEMFGEATN PTIAQGRVPL VLELLSPAQR PLQITRDLSA FWKGAYREVQ
KEMKGRYPKH VWPDDPANTA PTRRTKKYS