| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0042 |
|---|
| Symbol | caiT |
|---|
| ID | 5586104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 43611 |
|---|
| End bp | 45125 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640923773 |
|---|
| Product | L-carnitine/gamma-butyrobetaine antiporter |
|---|
| Protein accession | YP_001461210 |
|---|
| Protein GI | 157157828 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATG AAAAGAGAAA AACGGGAATA GAACCGAAGG TTTTCTTTCC GCCGTTAATA
ATCGTCGGCA TACTTTGTTG GCTTACAGTC AGAGATCTGG ATGCAGCGAA TGTCGTTATT
AATGCTGTAT TCAGTTACGT CACCAATGTA TGGGGATGGG CATTTGAATG GTATATGGTG
GTGATGCTTT TCGGTTGGTT CTGGCTGGTG TTTGGCCCGT ATGCCAAAAA GCGTTTAGGT
AACGAACCAC CTGAATTTAG TACCGCCAGT TGGATCTTTA TGATGTTCGC CTCCTGTACG
TCTGCTGCCG TACTGTTCTG GGGATCGATT GAGATCTACT ACTACATCTC CACCCCGCCG
TTTGGCTTAG AACCGAACTC GACAGGAGCG AAAGAGTTGG GGCTGGCTTA CAGCTTGTTC
CACTGGGGAC CTCTGCCGTG GGCCACTTAC AGCTTCCTTT CAGTCGCCTT CGCTTACTTC
TTCTTTGTCC GCAAAATGGA AGTGATTCGC CCCAGCTCGA CACTGGTGCC GCTGGTAGGT
GAAAAACACG CCAAAGGGTT GTTCGGCACT ATCGTCGACA ACTTCTATCT CGTCGCCTTG
ATCTTCGCGA TGGGTACCAG TCTGGGCCTT GCCACGCCGC TGGTGACCGA GTGTATGCAA
TGGTTGTTTG GCATTCCGCA TACCCTGCAA CTGGACGCTA TCATCATTAC CTGCTGGATT
ATCCTCAACG CCATTTGCGT CGCTTGCGGT CTGCAAAAAG GGGTACGTAT CGCCAGTGAC
GTGCGTAGTT ACCTGAGCTT CCTGATGCTG GGTTGGGTGT TCATTGTCAG CGGTGCCAGC
TTCATCATGA ACTACTTCAC CGATTCGGTG GGGATGTTGC TGATGTATCT GCCGCGCATG
TTGTTCTATA CCGATCCCAT CGCTAAAGGC GGCTTCCCGC AGGGCTGGAC CGTGTTCTAC
TGGGCATGGT GGGTGATTTA TGCTATCCAG ATGAGTATCT TCCTCGCCCG CATCTCCCGT
GGTCGTACTG TGCGTGAACT GTGCTTCGGC ATGGTGCTGG GGCTGACAGC GTCAACCTGG
ATCCTGTGGA CTGTACTCGG TAGTAACACT CTGCTGTTGA TAGATAAAAA CATCATCAAC
ATTCCAAATC TGATCGAACA GTACGGTGTG GCGCGCGCCA TCATTGAAAC CTGGGCCGCT
CTGCCACTCA GCACCGCCAC CATGTGGGGC TTCTTCATCC TCTGCTTTAT TGCCACCGTT
ACGCTGGTTA ACGCCTGCTC TTATACCCTG GCGATGTCCA CTTGCCGCGA AGTACGCGAT
GGTGAAGAAC CACCTCTGCT GGTGCGTATC GGTTGGTCAA TTCTGGTTGG CATTATCGGT
ATTGTTCTGC TGGCGCTCGG CGGCCTGAAA CCGATTCAAA CCGCCATTAT CGCCGGAGGA
TGCCCGCTGT TCTTCGTCAA CATTATGGTG ACGCTCTCCT TTATTAAAGA CGCGAAACAG
AACTGGAAAG ATTAA
|
|---|
| Protein sequence | MKNEKRKTGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV
VMLFGWFWLV FGPYAKKRLG NEPPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP
FGLEPNSTGA KELGLAYSLF HWGPLPWATY SFLSVAFAYF FFVRKMEVIR PSSTLVPLVG
EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI
ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS FIMNYFTDSV GMLLMYLPRM
LFYTDPIAKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG MVLGLTASTW
ILWTVLGSNT LLLIDKNIIN IPNLIEQYGV ARAIIETWAA LPLSTATMWG FFILCFIATV
TLVNACSYTL AMSTCREVRD GEEPPLLVRI GWSILVGIIG IVLLALGGLK PIQTAIIAGG
CPLFFVNIMV TLSFIKDAKQ NWKD
|
|---|
| |