Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A4628 |
Symbol | slt |
ID | 5591572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 4632723 |
End bp | 4634660 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640923721 |
Product | lytic murein transglycosylase |
Protein accession | YP_001461158 |
Protein GI | 157163840 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 58 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAAAAAG CCAAACAAGT TACCTGGCGG CTGTTGGCTG CCGGTGTCTG TCTGCTGACG GTCAGCAGCG TGGCGCGAGC CGACTCACTG GATGAGCAGC GTAGTCGTTA CGCGCAAATC AAGCAGGCCT GGGATAATCG ACAAATGGAT GTGGTCGAAC AAATGATGCC TGGACTGAAG GATTATCCGC TTTATCCCTA CCTGGAATAC CGCCAGATCA CCGATGATCT GATGAATCAA CCGGCGGTGA CGGTCACTAA CTTTGTTCGC GCTAACCCCA CGCTTCCTCC CGCTCGCACG CTGCAATCTC GTTTCGTCAA TGAACTGGCG CGGCGTGAAG ACTGGCGTGG CTTGTTAGCC TTTAGCCCGG AAAAGCCCGG AACTACCGAA GCGCAATGTA ATTACTACTA TGCGAAATGG AACACCGGGC AGAGTGAAGA AGCCTGGCAA GGGGCGAAAG AGCTGTGGCT AACCGGCAAG AGCCAGCCTA ATGCCTGTGA CAAGTTATTT AGCGTCTGGC GTGCGTCAGG TAAACAAGAT CCGCTGGCGT ATTTAGAGCG TATCCGTCTG GCGATGAAAG CGGGTAACAC TGGCCTGGTA ACAGTGCTGG CAGGGCAGAT GCCTGCCGAT TACCAGACTA TCGCCTCGGC AATCATTTCA CTGGCGAACA ACCCTAATAC GGTACTGACC TTCGCGCGTA CAACCGGCGC GACCGATTTT ACCCGTCAAA TGGCAGCGGT GGCGTTTGCC AGTGTGGCGC GGCAGGATGC TGAAAATGCA CGGCTGATGA TCCCGTCGCT TGCCCAGGCG CAGCAGCTTA ATGAAGATCA GATTCAGGAG CTGCGCGATA TCGTCGCCTG GCGTTTGATG GGCAACGATG TCACCGACGA GCAGGCGAAA TGGCGCGATG ACGCCATTAT GCGCTCGCAA TCCACGTCGT TGATTGAACG CCGTGTGCGA ATGGCACTTG GCACCGGCGA TCGTCGCGGC CTGAATACCT GGCTGGCGCG TCTGCCGATG GAAGCAAAAG AGAAAGATGA ATGGCGTTAC TGGCAGGCGG ATTTATTGCT GGAACGCGGA CGTGAAGCTG AAGCGAAAGA GATTTTGCAT CAACTCATGC AACAGCGTGG TTTCTACCCG ATGGTTGCAG CACAACGCAT CGGAGAAGAG TATGAGCTGA AGATTGATAA AGCGCCGCAG AATGTTGACA GCGCCCTGAC TCAGGGGCCG GAGATGGCGC GCGTGCGCGA GTTGATGTAC TGGAATCTCG ATAACACCGC GCGTAGCGAG TGGGCCAATC TGGTGAAGAG CAAGTCAAAA ACAGAGCAGG CTCAACTGGC TCGGTATGCT TTCAATAACC AATGGTGGGA TCTTAGCGTT CAGGCAACGA TCGCCGGGAA GCTTTGGGAT CATCTGGAAG AGCGATTCCC GCTGGCTTAC AACGATCTTT TCAAACGTTA CACCAGTGGG AAAGAGATCC CGCAAAGCTA TGCGATGGCG ATTGCCCGTC AGGAGAGCGC CTGGAATCCG AAAGTGAAAT CACCGGTAGG GGCCAGCGGC CTGATGCAGA TTATGCCTGG TACAGCGACC CATACGGTGA AGATGTTCTC TATTCCTGGT TATAGCAGCC CTGGGCAATT GCTGGATCCG GAAACGAATA TCAACATTGG CACCAGTTAC CTGCAATATG TTTATCAGCA GTTTGGCAAT AACCGTATTT TCTCCTCAGC AGCTTATAAC GCCGGACCTG GACGGGTGCG AACCTGGCTT GGCAACAGCG CCGGGCGTAT CGACGCTGTG GCATTTGTCG AGAGTATTCC GTTCTCCGAG ACGCGCGGTT ATGTGAAGAA CGTGCTGGCT TATGACGCTT ACTACCGCTA TTTCATGGGG GATAAACCGA CGTTGATGAG CGCCACGGAA TGGGGACGTC GTTACTGA
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Protein sequence | MEKAKQVTWR LLAAGVCLLT VSSVARADSL DEQRSRYAQI KQAWDNRQMD VVEQMMPGLK DYPLYPYLEY RQITDDLMNQ PAVTVTNFVR ANPTLPPART LQSRFVNELA RREDWRGLLA FSPEKPGTTE AQCNYYYAKW NTGQSEEAWQ GAKELWLTGK SQPNACDKLF SVWRASGKQD PLAYLERIRL AMKAGNTGLV TVLAGQMPAD YQTIASAIIS LANNPNTVLT FARTTGATDF TRQMAAVAFA SVARQDAENA RLMIPSLAQA QQLNEDQIQE LRDIVAWRLM GNDVTDEQAK WRDDAIMRSQ STSLIERRVR MALGTGDRRG LNTWLARLPM EAKEKDEWRY WQADLLLERG REAEAKEILH QLMQQRGFYP MVAAQRIGEE YELKIDKAPQ NVDSALTQGP EMARVRELMY WNLDNTARSE WANLVKSKSK TEQAQLARYA FNNQWWDLSV QATIAGKLWD HLEERFPLAY NDLFKRYTSG KEIPQSYAMA IARQESAWNP KVKSPVGASG LMQIMPGTAT HTVKMFSIPG YSSPGQLLDP ETNINIGTSY LQYVYQQFGN NRIFSSAAYN AGPGRVRTWL GNSAGRIDAV AFVESIPFSE TRGYVKNVLA YDAYYRYFMG DKPTLMSATE WGRRY
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