| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A4543 |
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| Symbol | fimD1 |
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| ID | 5594248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 4550149 |
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| End bp | 4552740 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640923639 |
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| Product | outer membrane usher protein fimD |
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| Protein accession | YP_001461079 |
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| Protein GI | 157163761 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.0863199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCATATTC GTAAGCATCG TTTGGCTGGT TTTTTTGTCC GGCTCTTTGT TGCCTGTGCT
TTTGCCGCAC AGGCACCTTT GTCATCTGCC GAACTCTATT TTAACCCGCG TTTTTTAGCG
GATGATCCCC AGGCTGTGGC TGATTTATCG CGTTTTGAAA ATGGGCAAGA ATTACCGCCA
GGGACGTATC GTGTCGATAT CTATTTGAAT AATGGTTATA TGGCAACGCG TGATGTCACA
TTTAATACGG GCGACAGTGA ACAAGGGATT GTTCCCTGCC TGACACGCGC GCAACTTGCC
AGTATGGGGC TGAATACGGC TTCTGTCTCC GGTATGAATC TGCTGGCGGA TGATGCCTGC
GTGCCATTAA CCTCAATGAT CCATGACGCT ACTGCGCATT TAGATGTTGG TCAGCAGCGA
CTCAACCTGA CGATCCCTCA GGCATTTATG AGTAATCGCG CGCGTGGTTA TATTCCTCCT
GAGTTATGGG ATCCCGGTAT TAATGCCGGA TTGCTCAATT ATAATTTCAG CGGAAATAGT
GTACAGAATC GGATTGGGGG TAACAGCCAT TATGCATATT TAAACCTACA GAGTGGGTTA
AATATTGGTG CGTGGCGTTT ACGCGACAAT ACCACCTGGA GTTATAACCG TAGCGACAGA
TCATCAGGTA GCAAAAATAA ATGGCAGCAT ATCAATACCT GGCTTGAGCG AGACATAATA
CCGTTACGTT CCCGGCTGAC GCTGGGTGAT GGTTATACTC AGGGCGATAT TTTCGATGGT
ATTAACTTTC GCGGCGCACA ATTGGCCTCA GATGACAATA TGTTACCCGA TAGCCAAAGA
GGATTTGCCC CGGTGATCCA CGGTATTGCT CGTGGTACTG CACAGGTCAC TATTAAACAA
AATGGGTATG ACATTTATAA TAGTACGGTG CCACCGGGGC CTTTTACCAT CAACGATATC
TATGCCGCAG GTAATAGTGG TGACTTGCAG GTAACGATCA AAGAGGCTGA CGGCAGCACG
CAGATTTTTA CCGTACCCTA TTCGTCAGTC CCGCTTTTGC AACGTGAAGG GCATACTCGT
TATTCCATTA CGGCAGGAGA ATACCGTAGT GGAAATGCGC AGCAGGAAAA ACCCCGCTTT
TTCCAGAGTA CATTACTCCA CGGCCTTCCG GCTGGCTGGA CAATATATGG TGGAACGCAA
CTGGCGGATC GTTATCGTGC TTTTAATTTC GGTATCGGGA AAAACATGGG GGCACTGGGC
GCTCTGTCTG TGGATATGAC GCAGGCTAAT TCCACACTTC CCGATGACAG TCAGCATGAC
GGACAATCGG TGCGTTTTCT CTATAACAAA TCGCTCAATG AGTCAGGCAC GAATATTCAG
TTAGTGGGTT ACCGTTATTC GACCAGCGGA TATTTTAATT TCGCTGATAC AACATACAGT
CGAATGAATG GCTACAACAT CGAAACACAG GACGGAGTTA TTCAGGTTAA GCCGAAATTC
ACCGACTATT ACAACCTCGC TTATAACAAA CGCGGGAAAT TACAGCTCAC CGTTACTCAG
CAACTCGGGC GCACATCAAC ACTGTATTTG AGTGGTAGCC ATCAAACTTA TTGGGGAACG
AGTAATGTCG ATGAGCAATT CCAGGCTGGT TTAAATACTG CATTCGAAGA TATCAACTGG
ACGCTCAGCT ATAGCCTGAC GAAAAACGCC TGGCAAAAAG GACGGGATCA GATGTTAGCG
CTTAACGTCA ATATTCCTTT CAGCCACTGG CTGCGTTCTG ACAGTAAATC TCAGTGGCGA
CATGCCAGTG CCAGCTACAG CATGTCACAC GATCTCAACG GTCGGATGAC CAATCTGGCT
GGTGTATACG GTACGTTGCT GGAAGACAAC AACCTCAGCT ATAGCGTGCA AACCGGCTAT
GCCGGGGGAG GCGATGGAAA TAGCGGAAGT ACAGGCTACG CCACGCTGAA TTATCGCGGT
GGTTACGGCA ATGCCAATAT CGGTTACAGC CATAGCGATG ATATTAAGCA GCTCTATTAC
GGAGTCAGCG GTGGGGTATT GGCTCATGCC AATGGCGTAA CGCTGGGGCA GCCGTTAAAC
GAAACAGTGG TGCTTGTTAA AGCGCCTGGC GCAAAAGATG CAAAAGTCGA AAACCAGACG
GGGGTGCGTA CCGACTGGCG TGGTTATGCC GTGCTGCCTT ATGCCACTGA ATATCGGGAA
AATAGAGTGG CGCTGGATAC CAATACCCTG GCTGATAACG TCGATTTAGA TAACGCGGTT
GCTAACGTTG TTCCCACTCG TGGGGCGATC GTGCGAGCAG AGTTTAAAGC GCGCGTTGGG
ATAAAACTGC TCATGACGCT AACCCACAAT AATAAGCCGC TGCCGTTTGG GGCGATGGTG
ACATCAGAGA GTAGCCAGAG TAGCGGCATT GTTGCGGATA ATGGTCAGGT TTACCTCAGC
GGAATGCCTC TAGCGGGAAA AGTTCAGGTG AAATGGGGAG AAGAGGAAAA TGCTCACTGT
GTCGCCAATT ATCAACTGCC ACCAGAGAGG CAGCAGCAGT TATTAACCCA GCTATCAGCT
GAATGTCGTT AA
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| Protein sequence | MHIRKHRLAG FFVRLFVACA FAAQAPLSSA ELYFNPRFLA DDPQAVADLS RFENGQELPP
GTYRVDIYLN NGYMATRDVT FNTGDSEQGI VPCLTRAQLA SMGLNTASVS GMNLLADDAC
VPLTSMIHDA TAHLDVGQQR LNLTIPQAFM SNRARGYIPP ELWDPGINAG LLNYNFSGNS
VQNRIGGNSH YAYLNLQSGL NIGAWRLRDN TTWSYNRSDR SSGSKNKWQH INTWLERDII
PLRSRLTLGD GYTQGDIFDG INFRGAQLAS DDNMLPDSQR GFAPVIHGIA RGTAQVTIKQ
NGYDIYNSTV PPGPFTINDI YAAGNSGDLQ VTIKEADGST QIFTVPYSSV PLLQREGHTR
YSITAGEYRS GNAQQEKPRF FQSTLLHGLP AGWTIYGGTQ LADRYRAFNF GIGKNMGALG
ALSVDMTQAN STLPDDSQHD GQSVRFLYNK SLNESGTNIQ LVGYRYSTSG YFNFADTTYS
RMNGYNIETQ DGVIQVKPKF TDYYNLAYNK RGKLQLTVTQ QLGRTSTLYL SGSHQTYWGT
SNVDEQFQAG LNTAFEDINW TLSYSLTKNA WQKGRDQMLA LNVNIPFSHW LRSDSKSQWR
HASASYSMSH DLNGRMTNLA GVYGTLLEDN NLSYSVQTGY AGGGDGNSGS TGYATLNYRG
GYGNANIGYS HSDDIKQLYY GVSGGVLAHA NGVTLGQPLN ETVVLVKAPG AKDAKVENQT
GVRTDWRGYA VLPYATEYRE NRVALDTNTL ADNVDLDNAV ANVVPTRGAI VRAEFKARVG
IKLLMTLTHN NKPLPFGAMV TSESSQSSGI VADNGQVYLS GMPLAGKVQV KWGEEENAHC
VANYQLPPER QQQLLTQLSA ECR
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