| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A4402 |
|---|
| Symbol | psd |
|---|
| ID | 5594884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 4414133 |
|---|
| End bp | 4415101 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640923500 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001460944 |
|---|
| Protein GI | 157163626 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.00017658 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTAAATT CATTTAAACT TTCGCTACAG TACATTCTGC CGAAACTATG GCTTACTCGC
CTGGCGGGTT GGGGCGCAAG CAAGCGGGCA GGATGGCTGA CAAAACTGGT TATCGATCTG
TTCGTTAAAT ACTACAAGGT CGACATGAAA GAGGCGCAAA AGCCGGACAC CGCCAGCTAC
CGCACCTTTA ACGAATTCTT TGTCCGTCCG CTGCGTGACG AAGTACGCCC AATCGATACC
GATCCGAATG TCCTGGTCAT GCCTGCCGAT GGCGTTATCA GCCAGTTGGG TAAAATCGAA
GAAAATAAAA TCCTGCAAGC CAAAGGCCAC AACTACAGCC TCGAAGCCCT GCTGGCAGGC
AACTATCTGA TGGCGGACCT GTTCCGCAAC GGTACGTTTG TGACCACTTA CCTCTCCCCG
CGTGACTACC ATCGCGTACA CATGCCGTGC AACGGTATTC TGCGTGAGAT GATCTACGTG
CCGGGCGATC TCTTCTCCGT TAACCATCTC ACCGCTCAGA ACGTGCCGAA TCTGTTTGCC
CGTAACGAAC GCGTGATTTG CCTGTTCGAT ACCGAATTTG GCCCGATGGC GCAGATTCTG
GTCGGGGCGA CGATTGTAGG CAGCATTGAG ACGGTCTGGG CGGGCACCAT TACGCCGCCG
CGCGAAGGTA TCATCAAGCG CTGGACCTGG CCTGCCGGGG AAAACGACGG TTCTGTGGCA
CTGCTGAAAG GCCAGGAAAT GGGCCGCTTT AAACTCGGCT CTACCGTTAT CAACCTGTTT
GCACCGGGTA AAGTGAATCT GGTTGAGCAA CTGGAAAGCC TGTCTGTCAC GAAAATTGGC
CAGCCGCTGG CAGTATCTAC CGAAACCTTT GTTACGCCAG ACGCTGAACC CGCCCCACTT
CCTGCTGAAG AGATCGAAGC AGAACACGAC GCCAGCCCAT TGGTTGACGA TAAAAAAGAC
CAGGTCTAA
|
|---|
| Protein sequence | MLNSFKLSLQ YILPKLWLTR LAGWGASKRA GWLTKLVIDL FVKYYKVDMK EAQKPDTASY
RTFNEFFVRP LRDEVRPIDT DPNVLVMPAD GVISQLGKIE ENKILQAKGH NYSLEALLAG
NYLMADLFRN GTFVTTYLSP RDYHRVHMPC NGILREMIYV PGDLFSVNHL TAQNVPNLFA
RNERVICLFD TEFGPMAQIL VGATIVGSIE TVWAGTITPP REGIIKRWTW PAGENDGSVA
LLKGQEMGRF KLGSTVINLF APGKVNLVEQ LESLSVTKIG QPLAVSTETF VTPDAEPAPL
PAEEIEAEHD ASPLVDDKKD QV
|
|---|
| |