| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A4303 |
|---|
| Symbol | |
|---|
| ID | 5591338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 4307236 |
|---|
| End bp | 4308822 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640923403 |
|---|
| Product | cyclic diguanylate phosphodiesterase domain-containing protein |
|---|
| Protein accession | YP_001460848 |
|---|
| Protein GI | 157163530 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4943] Predicted signal transduction protein containing sensor and EAL domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATC GTGCACGACA CCAATTACTG GCGTTGCCGG GCATTATCTT TTTAGTTCTC
TTTCCCATCA TTCTTTCGCT ATGGATTGCC TTCCTTTGGG CAAAATCAGA AGTGAATAAT
CAGCTCCGAA CCTTTGCTCA ACTGGCACTG GATAAATCCG AGCTGGTCAT TCGCCAGGCA
GATTTAGTGA GCGATGCAGC TGAACGCTAT CAGGGGCAAG TTTGCACTCC AGCCCATCAA
AAGCGAATGT TGAATATTAT TCGTGGCTAT CTTTATATTA ATGAATTGAT CTATGCCCGT
GATAACCATT TTTTATGCTC ATCGCTGATA GCGCCTGTAA ACGGCTATAC GATTGCACCG
GCCGATTATA AGCGTGAACC TAACGTTTCT ATCTATTATT ACCGCGATAC GCCTTTTTTC
TCTGGCTATA AAATGACCTA TATGCAGCGG GGAAATTATG TGGCGGTTAT CAACCCTCTC
TTCTGGAGTG AAGTGATGTC TGATGACCCG ACATTGCAAT GGGGTGTGTA TGATACGGTG
ACGAAAACCT TTTTCTCGTT AAGCAAAGAG GCCTCGGCAG CAACGTTTTC TCCGCTGATT
CATTTGAAGG ATTTAACCGT ACAAAGAAAT GGCTATTTAT ATGCGACAGT TTATTCGACA
AAACGCCCAA TTGCAGCCAT TGTTGCGACT TCATATCAAC GTCTTATAAC CCATTTTTAT
AATCATCTTA TTTTTGCGTT GCCCGCCGGT ATTTTGGGGA GTCTTGTTCT GCTATTACTC
TGGCTACGTA TTCGACAAAA CTATTTATCT CCCAAACGTA AATTGCAACG CGCCCTCGAA
AAACATCAAC TTTGTCTTTA TTACCAGCCA ATAATCGATA TCAAAACAGA AAAATGTATC
GGCGCTGAAG CGTTGTTACG TTGGCTTGGT GAGCAGGGGC AAATAATGAA TCCGGCAGAG
TTTATTCCGC TGGCAGAAAA GGAGGGGATG ATAGAACAGA TAACTGATTA TGTTATTGAT
AATGTCTTCC GCGATCTGGG CGATTACCTG GCAACACATG CAGATCGCTA TGTTTCTATT
AACCTGTCGG CCTCCGATTT TCATACGTCA CGGTTGATAG CGCGAATCAA TCAGAAAACA
GAGCAATACG CGGTGCGTCC GCAGCAAATT AAATTTGAAG TGACTGAACA TGCATTTCTT
GATGTTGACA AAATGACGCC GATTATTCTG GCTTTCCGCC AGGCAGGTTA CGAAGTGGCA
ATTGATGATT TTGGTATTGG CTACTCTAAC TTGCATAACC TTAAATCATT GAATGTCGAT
ATTTTGAAAA TCGATAAATC GTTTGTTGAA ACGCTGACCA CCCACAAAAC CAGTCATTTG
ATTGCGGAAC ACATCATCGA GCTGGCGCAC AGCCTGGGGT TAAAAACGAT CGCTGAAGGC
GTCGAAACTG AGGAGCAGGT TAACTGGCTG CGCAAACGCG GCGTGCGCTA TTGCCAGGGA
TGGTTTTTTG CGAAGGCGAT GCCGCCGCAG GTGTTTATGC AATGGATGGA GCAATTACCC
GCGCGGGAGT TAACGCGCGG GCAATAA
|
|---|
| Protein sequence | MSHRARHQLL ALPGIIFLVL FPIILSLWIA FLWAKSEVNN QLRTFAQLAL DKSELVIRQA
DLVSDAAERY QGQVCTPAHQ KRMLNIIRGY LYINELIYAR DNHFLCSSLI APVNGYTIAP
ADYKREPNVS IYYYRDTPFF SGYKMTYMQR GNYVAVINPL FWSEVMSDDP TLQWGVYDTV
TKTFFSLSKE ASAATFSPLI HLKDLTVQRN GYLYATVYST KRPIAAIVAT SYQRLITHFY
NHLIFALPAG ILGSLVLLLL WLRIRQNYLS PKRKLQRALE KHQLCLYYQP IIDIKTEKCI
GAEALLRWLG EQGQIMNPAE FIPLAEKEGM IEQITDYVID NVFRDLGDYL ATHADRYVSI
NLSASDFHTS RLIARINQKT EQYAVRPQQI KFEVTEHAFL DVDKMTPIIL AFRQAGYEVA
IDDFGIGYSN LHNLKSLNVD ILKIDKSFVE TLTTHKTSHL IAEHIIELAH SLGLKTIAEG
VETEEQVNWL RKRGVRYCQG WFFAKAMPPQ VFMQWMEQLP ARELTRGQ
|
|---|
| |