| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3981 |
|---|
| Symbol | hdfR |
|---|
| ID | 5591050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 3975539 |
|---|
| End bp | 3976378 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640923086 |
|---|
| Product | transcriptional regulator HdfR |
|---|
| Protein accession | YP_001460557 |
|---|
| Protein GI | 157163239 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATACGG AATTGTTAAA AACTTTCCTG GAAGTTAGCC GAACGCGTCA CTTTGGTCGA
GCGGCTGAAT CGCTCTATCT GACCCAGTCA GCAGTGAGCT TTCGAATCAG ACAACTGGAA
AATCAACTGG GTGTGAACCT TTTCACCCGC CACAGAAACA ATATCCGTTT AACCGCTGCC
GGTGAAAAAC TACTGCCTTA TGCAGAAACG CTCATGAGCA CCTGGCAGGC CGCCCGCAAG
GAGGTGGCGC ATACCTCACG ACATAACGAG TTTTCTATCG GTGCCAGCGC CTCATTGTGG
GAATGTATGC TTAATCAGTG GCTGGGACGT TTGTATCAAA ATCAGGATGC CCATACAGGC
TTACAGTTCG AAGCGCGAAT TGCCCAACGG CAGTCTCTGG TAAAACAGCT GCATGAACGC
CAGCTTGATC TTCTTATTAC CACTGAAGCG CCCAAAATGG ACGAATTTAG TAGTCAGTTG
CTGGGATATT TCACTTTAGC GCTTTATACC AGTGCCCCTT CAAAACTAAA GGGAGATCTT
AATTATCTGC GACTTGAGTG GGGGCCAGAT TTTCAACAGC ATGAGGCAGG TTTGATCGGT
GCTGACGAAG TGCCCATTCT GACAACCAGT TCTGCTGAAC TGGCACAGCA ACAGATTGCG
ATGCTTAATG GTTGCACCTG GCTACCCGTC AGCTGGGCGC GTAAAAAAGG CGGCCTGCAT
ACCGTTGTCG ATAGCACAAC ACTTTCACGG CCGCTTTATG CCATATGGCT GCAAAATAGC
GATAAAAATG CGTTGATTCG CGATCTTTTA AAAATTAACG TGCTGGATGA AGTGTATTAA
|
|---|
| Protein sequence | MDTELLKTFL EVSRTRHFGR AAESLYLTQS AVSFRIRQLE NQLGVNLFTR HRNNIRLTAA
GEKLLPYAET LMSTWQAARK EVAHTSRHNE FSIGASASLW ECMLNQWLGR LYQNQDAHTG
LQFEARIAQR QSLVKQLHER QLDLLITTEA PKMDEFSSQL LGYFTLALYT SAPSKLKGDL
NYLRLEWGPD FQQHEAGLIG ADEVPILTTS SAELAQQQIA MLNGCTWLPV SWARKKGGLH
TVVDSTTLSR PLYAIWLQNS DKNALIRDLL KINVLDEVY
|
|---|
| |