Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A3920 |
Symbol | trmE |
ID | 5592654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 3913999 |
End bp | 3915363 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640923028 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_001460505 |
Protein GI | 157163187 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 0.189642 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGATA ATGACACTAT CGTAGCCCAG GCCACGCCTC CGGGACGTGG CGGCGTTGGC ATCCTGCGCA TCTCCGGCTT CAAAGCCCGT GAAGTTGCCG AAACCGTGCT GGGTAAACTG CCTAAGCCGC GCTACGCCGA TTATCTTCCG TTTAAAGACG CCGACGGCAG CGTGCTCGAT CAGGGGATTG CGCTATGGTT CCCTGGCCCG AACTCGTTCA CCGGCGAAGA TGTGCTGGAA CTGCAAGGTC ATGGCGGTCC GGTGATCCTC GACCTGCTGT TAAAACGCAT TCTGACCATT CCCGGCCTGC GGATTGCTCG CCCTGGTGAG TTTTCCGAAC GCGCGTTTCT TAACGATAAA CTTGACTTAG CCCAGGCCGA GGCGATTGCC GATCTTATCG ACGCCAGTTC GGAACAGGCG GCCCGTTCGG CACTTAACTC GCTGCAAGGC GCATTCTCCG CACGGGTTAA TCATCTGGTA GAAGCCCTCA CCCACTTGCG CATTTACGTC GAAGCGGCAA TTGATTTCCC CGATGAAGAG ATCGATTTCC TCTCCGACGG AAAAATTGAA GCCCAGCTTA ATGACGTGAT TGCCGATCTC GATGCAGTGC GTGCTGAAGC ACGTCAGGGT AGTTTGTTGC GCGAAGGGAT GAAGGTGGTG ATTGCCGGAC GTCCTAACGC CGGTAAATCG AGCCTGTTAA ACGCGCTGGC GGGCCGTGAA GCAGCAATCG TAACTGATAT CGCCGGAACC ACACGTGACG TGCTGCGTGA GCATATCCAC ATTGACGGAA TGCCGCTGCA TATCATCGAT ACCGCTGGGC TACGTGAAGC CAGTGACGAA GTGGAACGTA TTGGTATCGA GCGCGCGTGG CAGGAAATTG AACAGGCCGA CCGCGTGCTG TTTATGGTCG ATGGCACCAC AACAGACGCC GTGGATCCGG CAGAGATCTG GCCGGAATTT ATCGCCCGTC TGCCAGCGAA ACTGCCGATC ACCGTGGTGC GCAATAAAGC CGATATCACC GGCGAAACGC TGGGAATGAG TGAAGTGAAC GGTCACGCGT TAATTCGTCT CTCGGCAAGG ACAGGTGAAG GCGTGGAGGT GCTGCGTAAC CATCTCAAAC AGAGCATGGG CTTTGACACC AACATGGAAG GCGGCTTCCT GGCGCGTCGT CGCCACCTAC AGGCGCTGGA ACAGGCAGCG GAACATCTAC AACAGGGCAA AGCGCAACTG TTGGGAGCCT GGGCAGGTGA ACTGCTGGCG GAAGAGTTGC GTCTGGCACA GCAGAACTTA AGCGAAATCA CCGGGGAATT TACTTCAGAC GACCTGCTGG GGCGGATTTT CTCCAGCTTC TGTATTGGTA AGTAA
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Protein sequence | MSDNDTIVAQ ATPPGRGGVG ILRISGFKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAR TGEGVEVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
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