| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3919 |
|---|
| Symbol | |
|---|
| ID | 5592653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3912247 |
|---|
| End bp | 3913893 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640923027 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_001460504 |
|---|
| Protein GI | 157163186 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.00313921 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCGC AACGCAATCT TTTAGTCATC GCTTTGCTGT TCGTGTCTTT CATGATCTGG
CAAGCCTGGG AGCAGGATAA AAACCCGCAA CCTCAGGCCC AACAGACCAC GCAGACAACG
ACCACCGCAG CGGGTAGCGC CGCCGACCAG GGCGTACCGG CCAGTGGCCA GGGGAAACTG
ATCTCGGTTA AGACCGACGT GCTTGATCTG ACCATCAACA CCCGTGGTGG TGATGTTGAG
CAAGCTCTGC TGCCTGCTTA CCCGAAAGAG CTGAACTCTA CCCAGCCGTT CCAGCTGCTG
GAAACTTCAC CGCAGTTTAT TTATCAGGCA CAGAGCGGTC TGACCGGTCG TGATGGCCCG
GATAACCCGG CTAACGGCCC GCGTCCGCTG TATAACGTTG AAAAAGACGC TTATGTGCTG
GCTGAAGGTC AAAACGAACT GCAGGTGCCG ATGACGTATA CCGACGCGGC AGGCAACACG
TTTACCAAAA CGTTTGTCCT GAAACGTGGT GATTACGCTG TCAACGTCAA CTACAACGTG
CAGAACGCTG GCGAGAAACC GCTGGAAATC TCCACCTTTG GTCAGTTGAA GCAATCCATC
ACTCTGCCAC CGCATCTCGA TACCGGAAGC AGCAACTTCG CACTGCACAC CTTCCGCGGC
GCGGCGTACT CCACGCCTGA CGAGAAGTAC GAGAAATACA AGTTCGATAC CATTGCCGAT
AACGAAAACC TGAACATCTC TTCGAAAGGT GGTTGGGTGG CAATGCTGCA ACAGTATTTC
GCGACGGCGT GGATCCCGCA TAACGACGGT ACCAACAACT TCTATACCGC TAATCTGGGT
AACGGCATCG CCGCTATCGG CTATAAATCT CAGCCGGTAC TGGTTCAGCC TGGTCAGACT
GGCGCGATGA ACAGCACCCT GTGGGTTGGC CCGGAAATCC AGGACAAAAT GGCAGCTGTT
GCTCCGCACC TGGATCTGAC CGTTGATTAC GGTTGGTTGT GGTTCATCTC TCAGCCGCTG
TTCAAACTGC TGAAATGGAT CCATAGCTTT GTGGGTAACT GGGGCTTCTC CATTATCATC
ATCACCTTTA TCGTTCGTGG CATCATGTAC CCGCTGACCA AAGCGCAGTA CACCTCCATG
GCGAAGATGC GTATGCTGCA GCCGAAGATT CAGGCAATGC GTGAGCGTCT GGGCGATGAC
AAACAGCGTA TCAGCCAGGA AATGATGGCG CTGTACAAAG CTGAGAAGGT TAACCCGCTG
GGCGGCTGCT TCCCGCTGCT GATCCAGATG CCAATCTTCC TGGCGTTGTA CTACATGCTG
ATGGGTTCCG TTGAACTGCG TCAGGCACCG TTTGCACTGT GGATCCACGA CCTGTCGGCA
CAGGACCCGT ACTACATCCT GCCGATCCTG ATGGGCGTAA CGATGTTCTT CATTCAGAAG
ATGTCGCCGA CCACTGTGAC CGACCCGATG CAGCAGAAGA TCATGACCTT TATGCCGGTC
ATCTTCACCG TGTTCTTCCT GTGGTTCCCG TCAGGTCTGG TGCTGTACTA TATCGTCAGC
AACCTGGTAA CCATTATTCA GCAGCAGCTG ATTTACCGTG GTCTGGAAAA ACGTGGCCTG
CATAGCCGCG AGAAGAAAAA ATCCTGA
|
|---|
| Protein sequence | MDSQRNLLVI ALLFVSFMIW QAWEQDKNPQ PQAQQTTQTT TTAAGSAADQ GVPASGQGKL
ISVKTDVLDL TINTRGGDVE QALLPAYPKE LNSTQPFQLL ETSPQFIYQA QSGLTGRDGP
DNPANGPRPL YNVEKDAYVL AEGQNELQVP MTYTDAAGNT FTKTFVLKRG DYAVNVNYNV
QNAGEKPLEI STFGQLKQSI TLPPHLDTGS SNFALHTFRG AAYSTPDEKY EKYKFDTIAD
NENLNISSKG GWVAMLQQYF ATAWIPHNDG TNNFYTANLG NGIAAIGYKS QPVLVQPGQT
GAMNSTLWVG PEIQDKMAAV APHLDLTVDY GWLWFISQPL FKLLKWIHSF VGNWGFSIII
ITFIVRGIMY PLTKAQYTSM AKMRMLQPKI QAMRERLGDD KQRISQEMMA LYKAEKVNPL
GGCFPLLIQM PIFLALYYML MGSVELRQAP FALWIHDLSA QDPYYILPIL MGVTMFFIQK
MSPTTVTDPM QQKIMTFMPV IFTVFFLWFP SGLVLYYIVS NLVTIIQQQL IYRGLEKRGL
HSREKKKS
|
|---|
| |