Gene EcHS_A3872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A3872 
Symbol 
ID5592341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp3867831 
End bp3868754 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content49% 
IMG OID640922982 
Productcarboxylate/amino acid/amine transporter 
Protein accessionYP_001460459 
Protein GI157163141 
COG category[R] General function prediction only 
COG ID[COG5006] Predicted permease, DMT superfamily 
TIGRFAM ID[TIGR00950] Carboxylate/Amino Acid/Amine Transporter 


Plasmid Coverage information

Num covering plasmid clones57 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTCCA CCAGAAAGGG GATGCTGAAC GTTCTGATTG CCGCCGTGTT GTGGGGAAGT 
TCAGGGGTCT GCGCGCAATA CATCATGGAG CAAAGCCAGA TGTCGTCGCA GTTTTTGACT
ATGACGCGTT TGATATTCGC CGGTTTGATT CTACTGACGC TGTCATTTGT TCATGGCGAT
AAAATCTTTT CTATTATTAA CAATCATAAA GATGCCATTA GCCTGCTGAT TTTTTCCGTG
GTTGGCGCGC TAACTGTACA GCTCACTTTT TTGCTAACCA TCGAAAAATC GAACGCAGCC
ACGGCAACGG TGCTGCAATT CCTCTCACCG ACGATTATCG TCGCCTGGTT CTCACTGGTG
CGTAAATCGC GCCCGGGCAT TCTGGTTTTC TGCGCTATTT TGACATCGCT GGTCGGGACT
TTTTTATTGG TGACACACGG TAATCCGACG TCATTATCGA TCTCTCCTGC CGCGTTGTTC
TGGGGCATTG CCTCGGCATT TGCTGCTGCA TTCTATACCA CCTATCCCTC AACGCTAATT
GCCCGCTATG GCACGTTGTC TGTCGTCGGC TGGAGTATGC TGATCGGCGG TCTGATTCTG
TTGCCTTTTT ATGCCAGACA AGGGACAAAC TTTGTCGTTA ACGGCAGTTT GATTTTGGCG
TTTTTTTATT TGATCGTCAT TGGTACGTCC CTGACATTTA GTCTGTACCT GAAAGGAGCA
CAATTAATTG GCGGTCCAAA AGCCAGCATT TTGAGCTGTG CAGAACCATT AAGTAGCGCG
CTACTCTCTT TGCTGTTGCT GGGGATCACG TTCACATTAC CGGACTGGCT GGGAACGCTG
CTGATTCTGT CATCGGTAAT TTTGATTTCA ATGGATTCCC GTCGCCGCGC CAGAAAAATA
AATCGTCCGG CGCGGGATGA GTGA
 
Protein sequence
MGSTRKGMLN VLIAAVLWGS SGVCAQYIME QSQMSSQFLT MTRLIFAGLI LLTLSFVHGD 
KIFSIINNHK DAISLLIFSV VGALTVQLTF LLTIEKSNAA TATVLQFLSP TIIVAWFSLV
RKSRPGILVF CAILTSLVGT FLLVTHGNPT SLSISPAALF WGIASAFAAA FYTTYPSTLI
ARYGTLSVVG WSMLIGGLIL LPFYARQGTN FVVNGSLILA FFYLIVIGTS LTFSLYLKGA
QLIGGPKASI LSCAEPLSSA LLSLLLLGIT FTLPDWLGTL LILSSVILIS MDSRRRARKI
NRPARDE