Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A3839 |
Symbol | rfaP |
ID | 5593297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 3834739 |
End bp | 3835536 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640922951 |
Product | lipopolysaccharide core biosynthesis protein RfaP |
Protein accession | YP_001460429 |
Protein GI | 157163111 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.000000421355 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGAAC TTAAAGAGCC GTTTGCCACG TTATGGCGCG GTAAAGATCC TTTTGAGGAA GTTAAAACCT TGCAGGGTGA GATATTTCGT GAACTGGAAA CTCGCCGTAC TCTGCGCTTT GAAATGGCGG GAAAAAGCTA TTTTCTCAAA TGGCATCGCG GCACGACCCT GAAAGAGATA ATCAAAAATT TACTCTCATT GCGGATGCCA GTATTAGGCG CAGACCGCGA ATGGAATGCG ATTCATCGAC TGCGGGATGT CGGCGTTGAT ACTATGTATG GGGTGGCATT CGGCGAAAAA GGCATGAATC CGCTGACCAG AACCTCGTTT ATTATTACCG AAGATCTGAC ACCAACCATA AGTCTGGAAG ATTACTGTGC TGACTGGGCG ACCAACCCAC CAGATGTTCG CGTAAAGCGT ATGCTTATTA AGCGTGTCGC GACGATGGTG CGCGATATGC ATGCTGCGGG CATTAATCAC CGTGACTGTT ATATCTGTCA TTTCCTGCTG CACTTGCCTT TTTCCGGTAA GGAAGAGGAG TTAAAAATTT CGGTAATTGA CCTGCACCGG GCGCAGCTTC GCACGCGCGT TCCACGTCGT TGGCGCGATA AAGATCTTAT TGGGCTTTAT TTTTCTTCGA TGAATATCGG CCTGACTCAG CGGGATATCT GGCGGTTTAT GAAAGTGTAT TTTGCCGCCC CGCTTAAAGA CATTCTCAAG CAGGAACAAG GACTGCTGTC GCAAGCAGAA GCAAAAGCCA CAAAAATCAG GGAAAGAACG ATTCGAAAAT CGTTGTAA
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Protein sequence | MVELKEPFAT LWRGKDPFEE VKTLQGEIFR ELETRRTLRF EMAGKSYFLK WHRGTTLKEI IKNLLSLRMP VLGADREWNA IHRLRDVGVD TMYGVAFGEK GMNPLTRTSF IITEDLTPTI SLEDYCADWA TNPPDVRVKR MLIKRVATMV RDMHAAGINH RDCYICHFLL HLPFSGKEEE LKISVIDLHR AQLRTRVPRR WRDKDLIGLY FSSMNIGLTQ RDIWRFMKVY FAAPLKDILK QEQGLLSQAE AKATKIRERT IRKSL
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