| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3782 |
|---|
| Symbol | |
|---|
| ID | 5595244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3774107 |
|---|
| End bp | 3775384 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640922896 |
|---|
| Product | TRAP transporter DctM family protein |
|---|
| Protein accession | YP_001460374 |
|---|
| Protein GI | 157163056 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTGC TGATTTTTCT GGGCTGTCTG TTGGGTGGTA TTGCTATCGG TTTGCCTATT
TCCTGGGCAC TGTTGTTGTG CGGGGCGGCG TTAATGTTCT GGCTGGACAT GTTTGATGTC
CAGATCATGG CACAAACGCT GGTGAACGGA GCCGATAGCT TCTCCCTGCT GGCGATTCCG
TTCTTTGTGC TGGCGGGTGA AATCATGAAT GCGGGCGGCT TGTCAAAACG CATTGTTGAC
CTGCCGATGA AACTGGTGGG GCATAAACCA GGCGGGCTGG GCTACGTCGG CGTGCTGGCG
GCTATGATTA TGGCAAGCCT TTCTGGTTCT GCCGTTGCGG ATACCGCCGC CGTTGCCGCT
CTACTGGTGC CGATGATGCG CAGCGCCAAC TACCCGGTCA ACCGGGCGGC GGGGCTGATT
GCCTCTGGCG GCATTATCGC GCCAATTATT CCCCCTTCCA TTCCGTTTAT TATCTTCGGC
GTTTCCAGCG GATTATCCAT CAGTAAGCTG TTTATGGCGG GCATTGCCCC TGGCATGATG
ATGGGCGCAA CGCTGATGCT TACCTGGTGG TGGCAGGCCA GTCGCCTTAA TTTACCCCGC
CAGCAAAAAG CAACGATGCA GGAAATCTGG CACTCTTTTG TCTCCGGTAT CTGGGCGCTG
TTTCTTCCAG TCATCATTAT TGGCGGGTTT CGCTCCGGTC TGTTTACCCC TACCGAAGCC
GGGGCCGTTG CTGCTTTCTA TGCGCTGTTT GTCGCCACAG TTATTTACCG TGAAATGACC
TTCGCCACAC TTTGGCATGT ACTCATTGGC GCGGCGAAAA CCACCTCAGT GGTTATGTTT
CTGGTGGCCT CGGCACAAGT TTCCGCCTGG CTAATTACCA TTGCTGAACT GCCGATGATG
GTTTCTGATT TACTGCAACC GTTGGTCGAT TCACCGCGTC TGCTGTTTAT CGTCATTATG
GTGGCTATCC TGATTGTCGG CATGGTCATG GATTTAACGC CGACGGTATT AATTCTTACC
CCGGTATTAA TGCCTTTAGT TAAAGAGGCA GGAATCGATC CGATTTATTT CGGTGTCATG
TTTATCATTA ACTGCTCAAT CGGCTTAATT ACACCGCCTA TCGGTAATGT ACTTAACGTT
ATTTCAGGGG TGGCAAAACT CAAATTCGAT GATGCAGTCA GAGGCGTTTT CCCTTACGTC
CTGGTTTTAT ATTCATTATT AGTCGTATTT GTTTTTATTC CCGATCTCAT CATCCTCCCT
TTGAAATGGA TTAATTAA
|
|---|
| Protein sequence | MAVLIFLGCL LGGIAIGLPI SWALLLCGAA LMFWLDMFDV QIMAQTLVNG ADSFSLLAIP
FFVLAGEIMN AGGLSKRIVD LPMKLVGHKP GGLGYVGVLA AMIMASLSGS AVADTAAVAA
LLVPMMRSAN YPVNRAAGLI ASGGIIAPII PPSIPFIIFG VSSGLSISKL FMAGIAPGMM
MGATLMLTWW WQASRLNLPR QQKATMQEIW HSFVSGIWAL FLPVIIIGGF RSGLFTPTEA
GAVAAFYALF VATVIYREMT FATLWHVLIG AAKTTSVVMF LVASAQVSAW LITIAELPMM
VSDLLQPLVD SPRLLFIVIM VAILIVGMVM DLTPTVLILT PVLMPLVKEA GIDPIYFGVM
FIINCSIGLI TPPIGNVLNV ISGVAKLKFD DAVRGVFPYV LVLYSLLVVF VFIPDLIILP
LKWIN
|
|---|
| |