| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3619 |
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| Symbol | rtcR |
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| ID | 5594401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 3602543 |
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| End bp | 3604135 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640922736 |
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| Product | sigma-54 dependent transcriptional regulator RtcR |
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| Protein accession | YP_001460217 |
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| Protein GI | 157162899 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 64 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAAAA CAGTGGCTTT TGGCTTTGTC GGTACCGTGC TGGATTATGC CGGGCGCGGC
AGTCAGCGCT GGTCGAAATG GCTTCCGACA CTCTGTTTAT GCCAGCAAGA ATCGTTGGTC
ATCGATCGAC TGGAATTATT GCATGACGCC CGCTCGCTAT TTGAAACGCT TAAACGCGAT
ATCGCCAGCG TTTCGCCAGA AACAGAAGTG GTGAGCGTTG AGATTGAACT GCATAACCCG
TGGGATTTCG AAGAGGTTTA CGCTTGCCTG CATGATTTCG CCCGTGGTTA CGAGTTTCAG
CCAGAAAAAG AAGACTATTT AATTCACATT ACCACCGGCA CCCACGTCGC GCAGATTTGC
TGGTTTCTGC TGGCGGAAGC GCGTTACCTG CCCGCCCGGC TGATACAATC TTCACCTCCG
CGCAAAAAAG AACAGCCGCG CGGCGCAGGT GAAGTGACGA TTATCGATCT CGATTTAAGC
CGTTATAACG CCATCGCCAG CCGCTTTGCC GAGGAACGCC AGCAAACGCT TGATTTTCTT
AAGTCCGGCA TTGCCACGCG TAACCCCCAC TTCAACCGCA TGATTGAGCA GATCGAAAAA
GTGGCGATCA AATCCCGCGC GCCGATTCTG CTTAACGGTC CAACCGGCGC GGGCAAGTCA
TTTCTGGCGC GACGCATCTT CGAGTTAAAA CAGGCGCGGC ATCAGTTTAG CGGCGCGTTT
GTGGAAGTGA ACTGCGCCAC CCTGCGCGGC GATACCGCCA TGTCGACGCT GTTTGGTCAT
GTAAAAGGCG CGTTTACCGG GGCGCGGGAA TCTCGTGAAG GTTTATTACG CAGCGCCAAC
GGCGGAATGT TGTTTCTTGA TGAGATTGGC GAACTGGGCG CAGACGAACA AGCAATGCTG
CTAAAAGCCA TTGAAGAGAA AACCTTTTAC CCGTTTGGCA GCGATCGCCA GGTGAGCAGT
GATTTTCAGC TTATCGCCGG AACGGTGCGC GATTTGCGCC AGCTGGTTGC CGAAGGCAAA
TTCCGCGAAG ATCTGTACGC GCGGATCAAT CTCTGGACCT TCACCCTGCC GGGGCTACGC
CAGCGCCAGG AAGATATTGA ACCTAACCTG GATTATGAAG TGGAGCGCCA CGCCTCACTC
ACCGGCGACA GCGTGCGTTT TAACACCGAA GCGCGGCGTG CCTGGCTGGC CTTTGCAACA
TCTCCTCAGG CGACATGGCG CGGTAACTTT CGCGAGCTTT CTGCCAGCGT CACGCGGATG
GCAACCTTTG CCACTAGCGG ACGCATCACT CTGGACGTGG TTGAAGATGA GATAAACCGT
CTGCGCTATA ACTGGCAGGA GAGCCGTCCC TCCGCGCTTA CGCAACTGCT GGGCGCAGAG
GCAGAAAACA TCGATCTCTT CGACCGTATG CAACTGGAAC ACGTTATCGC TATCTGCCGC
CAGGCAAAGT CGCTTTCTGC TGCCGGACGA CAGCTTTTTG ATGTTTCGCG CCAGGGCAAA
GCCAGCGTCA ATGACGCGGA TCGGCTACGC AAATACCTGG CGCGTTTTGG TCTGACCTGG
GAAGCATTGC AGGATCAGCA CAGCTCCAGT TGA
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| Protein sequence | MRKTVAFGFV GTVLDYAGRG SQRWSKWLPT LCLCQQESLV IDRLELLHDA RSLFETLKRD
IASVSPETEV VSVEIELHNP WDFEEVYACL HDFARGYEFQ PEKEDYLIHI TTGTHVAQIC
WFLLAEARYL PARLIQSSPP RKKEQPRGAG EVTIIDLDLS RYNAIASRFA EERQQTLDFL
KSGIATRNPH FNRMIEQIEK VAIKSRAPIL LNGPTGAGKS FLARRIFELK QARHQFSGAF
VEVNCATLRG DTAMSTLFGH VKGAFTGARE SREGLLRSAN GGMLFLDEIG ELGADEQAML
LKAIEEKTFY PFGSDRQVSS DFQLIAGTVR DLRQLVAEGK FREDLYARIN LWTFTLPGLR
QRQEDIEPNL DYEVERHASL TGDSVRFNTE ARRAWLAFAT SPQATWRGNF RELSASVTRM
ATFATSGRIT LDVVEDEINR LRYNWQESRP SALTQLLGAE AENIDLFDRM QLEHVIAICR
QAKSLSAAGR QLFDVSRQGK ASVNDADRLR KYLARFGLTW EALQDQHSSS
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